PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca19321.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 225aa MW: 25545.2 Da PI: 9.2294

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca19321.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.6	2e-13	72	191	1	91
FAR1 1 kfYneYAkevGFsvrkskskks..........krngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek..... 72 +fY++YA +GF rks++k+ + n ++++ vC++eg+r++++ + + r+++ tr+gC+ak++ k + Dca19321.1 72 QFYETYAAACGFVPRKSSTKRFsarksstkrsDPNYFVKTKLIVCNREGFRDSKSAVlpdygedddtrvKPYNPRQTKITRIGCNAKIVFKCTFkmvdk 170 69*******99888877766555555543344556777889******9988**99887766777899*******98876533322 PP FAR1 73 ..dgkwevtkleleHnHelap 91 ++v+++ + HnH l+p Dca19321.1 171 vtMPFYVVDQFYEAHNHLLCP 191 22456999********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-11	72	191	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MSGPLDLALP SAKESTASFS TPQCLEVDEV RGGNHLSLRL TPGGSEEWIR NVAKQFTPTI 60 GQTFATLNEC IQFYETYAAA CGFVPRKSST KRFSARKSST KRSDPNYFVK TKLIVCNREG 120 FRDSKSAVLP DYGEDDDTRV KPYNPRQTKI TRIGCNAKIV FKCTFKMVDK VTMPFYVVDQ 180 FYEAHNHLLC PLKYREFQIK ARQLSLHQKQ TIIDNCKVSS FVDVD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	9e-11	FAR1-related sequence 10