PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca19563.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 391aa MW: 43559.8 Da PI: 6.3148

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca19563.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2.1e-32	216	273	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk s+fprsYYrCtsa C+vkk+vers +d ++v++tYeg+H+h+ Dca19563.1 216 EDGYRWRKYGQKAVKHSPFPRSYYRCTSAACNVKKRVERSFSDSSIVVTTYEGHHTHP 273 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51233	10.184	9	212	IPR001846	von Willebrand factor, type D domain
Gene3D	G3DSA:2.20.25.80	5.0E-33	200	273	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-28	207	274	IPR003657	WRKY domain
PROSITE profile	PS50811	30.905	210	275	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	215	274	IPR003657	WRKY domain
Pfam	PF03106	3.5E-25	216	273	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
METKQEVKIE ADLLNSHFST QNHSLFSSSS SSFSKSLSST IGLESDILFD KLNSSTTTTT 60 SVGFMELLGV QQDIFSNIIN NNNNNPCLFD DTTLLFNNTN NNGYDQEHDR QHGIHIPYDD 120 EAFLISPPSS DMNNNNNNNN NNNNNNNNNL PTTPNSSSIS SASNDDNNNN DQQQQQQKQE 180 EDCDKKQGTK WKKTKEKRPR EARVAFMTKS EVDLLEDGYR WRKYGQKAVK HSPFPRSYYR 240 CTSAACNVKK RVERSFSDSS IVVTTYEGHH THPCTNLPRG MMAVAGYGSG IDAAGCGYMM 300 PVHQMTDDTS FRHQLQMNYI NSLVPQLNYV GNISPHTTMT TITPTTTTTS TSCSSLSAQE 360 RCGGNAVNGG LITDNGMLQD IVPTLMKKLD H

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

METKQEVKIE ADLLNSHFST QNHSLFSSSS SSFSKSLSST IGLESDILFD KLNSSTTTTT  60
SVGFMELLGV QQDIFSNIIN NNNNNPCLFD DTTLLFNNTN NNGYDQEHDR QHGIHIPYDD  120
EAFLISPPSS DMNNNNNNNN NNNNNNNNNL PTTPNSSSIS SASNDDNNNN DQQQQQQKQE  180
EDCDKKQGTK WKKTKEKRPR EARVAFMTKS EVDLLEDGYR WRKYGQKAVK HSPFPRSYYR  240
CTSAACNVKK RVERSFSDSS IVVTTYEGHH THPCTNLPRG MMAVAGYGSG IDAAGCGYMM  300
PVHQMTDDTS FRHQLQMNYI NSLVPQLNYV GNISPHTTMT TITPTTTTTS TSCSSLSAQE  360
RCGGNAVNGG LITDNGMLQD IVPTLMKKLD H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-25	208	272	10	74	Probable WRKY transcription factor 4
2lex_A	2e-25	208	272	10	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9RLH1	5e-71	A0A0K9RLH1_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	1e-43	WRKY DNA-binding protein 23