PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca19784.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 486aa    MW: 53902.4 Da    PI: 7.1558
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca19784.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.9e-192077457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Dca19784.1 20 YVRYTPEQVEALERLYNDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                6789****************************************************97 PP
2START102.66.7e-3319130961173
                 HHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEE CS
       START  61 lveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgil 153
                  v+e+l+d++ W ++++++++++v s+g  g+++l +++l+a+++l+p Rdf+  Ry+  l++g+ vi+++S++++q+ p+    +++vRae  pSg+l
  Dca19784.1 191 KVAEILKDRPSWYRDCRAVDVMNVMSTGngGTIELLYMQLYAPTTLAPpRDFWLMRYTSLLEDGSVVICERSLNNTQNGPSmpsVQHFVRAEIMPSGYL 289
                 6889999999**********************************************************************9888899************ PP

                 EEEECTCEEEEEEEE-EE-- CS
       START 154 iepksnghskvtwvehvdlk 173
                 i+p+++g+s +++v+h dl+
  Dca19784.1 290 IRPCEGGGSIIHIVDHLDLE 309
                 ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-171381IPR009057Homeodomain-like
PROSITE profilePS5007115.4831478IPR001356Homeobox domain
SMARTSM003893.5E-151682IPR001356Homeobox domain
CDDcd000865.74E-161979No hitNo description
PfamPF000461.9E-162077IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182177IPR009057Homeodomain-like
CDDcd146861.22E-571110No hitNo description
SMARTSM002341.4E-9134342IPR002913START domain
SuperFamilySSF559618.79E-26158312No hitNo description
PROSITE profilePS5084818.772176309IPR002913START domain
Gene3DG3DSA:3.30.530.203.6E-16186309IPR023393START-like domain
PfamPF018528.9E-30191309IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MMAVSSGSRD SSKMEADGKY VRYTPEQVEA LERLYNDCPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRNE ASRLQGVNRK LTAMNKLLME ENDRLQKQVA HLVYENSYFR  120
QQTKNNAATL ATTDTSCESV VTSGQQQASS QRPLKDASPA GLMSIAEETL TEFLAKATGT  180
AVEWIQMPGM KVAEILKDRP SWYRDCRAVD VMNVMSTGNG GTIELLYMQL YAPTTLAPPR  240
DFWLMRYTSL LEDGSVVICE RSLNNTQNGP SMPSVQHFVR AEIMPSGYLI RPCEGGGSII  300
HIVDHLDLEA LRHLRQISQD ISQPNVTGFG RRPAALRALS HRLSRGFNEA VNGFVDEGWS  360
MMDSDGIDDV TVLVNSSSAS KMLAANNYYN NGFPSVGMSV LCARASMLLQ NVPPAVLLRF  420
LREHRSEWAD SGIDAYAAAA VKAAPCTLPV GRSGCVGGQV ILPLAHTIEN EEESSPVVQL  480
LSFSFT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668539.10.0PREDICTED: homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A0K9QMP50.0A0A0K9QMP5_SPIOL; Uncharacterized protein
STRINGXP_010668539.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]