PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca19834.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 498aa MW: 58239.9 Da PI: 9.2595

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca19834.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.4	6.2e-14	126	216	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k + + +++ l++p +f++++ + ++ +tle+e+g+ +evk+ + ++++++GW +F+ ++L gD+ vF+l+++++f +v ++rk Dca19834.1 126 FVKYVFAPKAARKSKLSIPPPFCRRYLPV--VDTVMTLETENGELYEVKY--LPR--GTTFSAGWGRFAFCKKLARGDIAVFHLVRSTRF--KVYIIRK 216 667777888889999*********433..4568***********..444..5779*********************997777..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.87E-18	120	216	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.1E-15	122	216	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.39E-15	124	215	No hit	No description
PROSITE profile	PS50863	11.476	126	217	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.0E-12	126	216	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-13	126	217	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MDWKSANADD NQFIVYKRRH SNDNCRNTEE VVETNFDNIT GFEDSQTVIN NLLQHHDLSE 60 VPPHAYYKLF FSQNEFLHRY LLKDLNPNLF VATKCQFTKD YDTKCEIEIS VLARVWNKSN 120 FQQPIFVKYV FAPKAARKSK LSIPPPFCRR YLPVVDTVMT LETENGELYE VKYLPRGTTF 180 SAGWGRFAFC KKLARGDIAV FHLVRSTRFK VYIIRKGSST VKLPTHLLKL YKKASECVLD 240 YNQFRVYKRR HANVNCRNAE EVVETKFNKI TGFEHFKTVI NNSLHHHDLS EVFLHAYYKL 300 CCSQNAFLHE VLVKVLNPNL FVGAISIIIS TTVNISTGLR TCTLSTFLDN VSDWSKTLEI 360 YNSFGMNVSF LSSRLHDLHN LAVSSEGTVS RRKYIKACRE RPRCEHEFQK LKMILDKWRK 420 IYVLLASKVK DLESKVGWEA YMEAYYRHIQ AKDEIREIEV LIGELSKFLE HYDDVIQSLK 480 LKANKHEHEF ITKAHAPW

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MDWKSANADD NQFIVYKRRH SNDNCRNTEE VVETNFDNIT GFEDSQTVIN NLLQHHDLSE  60
VPPHAYYKLF FSQNEFLHRY LLKDLNPNLF VATKCQFTKD YDTKCEIEIS VLARVWNKSN  120
FQQPIFVKYV FAPKAARKSK LSIPPPFCRR YLPVVDTVMT LETENGELYE VKYLPRGTTF  180
SAGWGRFAFC KKLARGDIAV FHLVRSTRFK VYIIRKGSST VKLPTHLLKL YKKASECVLD  240
YNQFRVYKRR HANVNCRNAE EVVETKFNKI TGFEHFKTVI NNSLHHHDLS EVFLHAYYKL  300
CCSQNAFLHE VLVKVLNPNL FVGAISIIIS TTVNISTGLR TCTLSTFLDN VSDWSKTLEI  360
YNSFGMNVSF LSSRLHDLHN LAVSSEGTVS RRKYIKACRE RPRCEHEFQK LKMILDKWRK  420
IYVLLASKVK DLESKVGWEA YMEAYYRHIQ AKDEIREIEV LIGELSKFLE HYDDVIQSLK  480
LKANKHEHEF ITKAHAPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	1e-18	B3 family protein