PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20043.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 390aa    MW: 44651.9 Da    PI: 9.3891
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20043.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-114564499
                -EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 44 rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                + W+v++  +   ++ ++l++GW+ F+ka+ L++gD+v+F+++++s f   vk+f +
  Dca20043.1  4 KCWRVEV--EEDVEGtIYLRDGWNAFAKAHCLEVGDVVLFEYVEQSIF--QVKIFGQ 56
                5699999..55544459*************************998988..9999875 PP
2B341.72.1e-131302041796
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 ++p     ++++    + +++l+d++g++W v+l   k+ g++++ +GWk+F k n++  gD++ Fk+++  ++   v+v
  Dca20043.1 130 TIPMAVGYKNKLTD--EEEVVLQDPKGNRWPVRL-GHKRTGHVLFIRGWKQFLKGNNIVIGDTLNFKFTS--QKLIEVHV 204
                 56666666666664..458***************.344445688889********************765..33345555 PP
3B339.21.2e-122433161795
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ++pk  a++ ++k++e   + l+d++g+ W ++++ +   gr+ ltkGW eF++   +k gD++ F++++   ++  ++
  Dca20043.1 243 YIPKAIARKQNLKNKE--NVALRDTNGKYWPLEVKTWYD-GRVALTKGWVEFCEGLAIKNGDTLEFEFVS--PRRIQIS 316
                 79******99888655..6***************76655.6899***********************765..4444554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.028157IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-14259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-14259IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-9455IPR003340B3 DNA binding domain
CDDcd100177.57E-10454No hitNo description
Gene3DG3DSA:2.40.330.107.5E-16114208IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-4116208IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-15121208IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-11130204IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534131208IPR003340B3 DNA binding domain
CDDcd100171.34E-9145194No hitNo description
SMARTSM010190.0018238321IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-15243320IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-10243318IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-15243320IPR015300DNA-binding pseudobarrel domain
CDDcd100179.71E-9243319No hitNo description
PROSITE profilePS5086312.337244321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNKKCWRVEV EEDVEGTIYL RDGWNAFAKA HCLEVGDVVL FEYVEQSIFQ VKIFGQSGCL  60
KNTFVDRKES GPTTRKVIDI EEDTEDKNTN YIKRRATSRG RRKRKSSKVG ENGTSFSICL  120
RKKYQFLTQT IPMAVGYKNK LTDEEEVVLQ DPKGNRWPVR LGHKRTGHVL FIRGWKQFLK  180
GNNIVIGDTL NFKFTSQKLI EVHVARSSKR VDNHHHREAN FCSSTDANGD CVEPQCNYAT  240
EDYIPKAIAR KQNLKNKENV ALRDTNGKYW PLEVKTWYDG RVALTKGWVE FCEGLAIKNG  300
DTLEFEFVSP RRIQISIHKR DHPHEIIIDD ATIDKEVTTT KGSANVLLDS GIAMGKMDIK  360
GFASDLLALT KEHYLLQTPP GFQPIKQRVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192103KRRATSRGRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.16e-17B3 family protein