PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca20074.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 724aa MW: 82980.7 Da PI: 7.017

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca20074.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.5	2.4e-14	79	174	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y+++++ +GFs+rk + ++ + it+r f Cs++g++ +++ + ++++ tr +Cka ++ ++ g wev + eHnH+l+p Dca20074.1 79 EMYQKHSQVMGFSTRKGTIRRVnGVGTPITQRYFLCSCQGEHGGGSRRglkgVSVQQKNALITRSECKAWIRTLVNEAGLWEVVDHIIEHNHPLTP 174 58**************999845567799*******99988888888788889999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-12	79	174	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-32	295	390	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	545	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0011	556	583	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence Send to blast
MSNNKTKKPC TITFETENVI DLEKDASEED VFEGGGEDNP VDKEHDEGGV DDNLSDMKDF 60 DFSRSLVGVK AKSSEDLYEM YQKHSQVMGF STRKGTIRRV NGVGTPITQR YFLCSCQGEH 120 GGGSRRGLKG VSVQQKNALI TRSECKAWIR TLVNEAGLWE VVDHIIEHNH PLTPPQWQHH 180 HRSERRISEA EGEVIKAMTE TLVAPSVQFR VASAVAGGDT LVGHTKRDHI NFVNRLKMRS 240 IEGGDAATLI NLMNSRQAED PGFFFRVQFD EDGRLFNLFW HDSMMKEDYL LYHDVVIFDT 300 TYRTNRYNLI CGAFVGINNH WSNVMFGCSF LSDEKAESFE WLFNVFNESM GEDVRPVSIF 360 TDQDQAMSNA IEKVFPASRH RLCQWHIQQN AISHFGSLKH DRAFQKRFNK CLNGCYNETE 420 FEETWSNMIK DYNLHDHSWF KRLYNIKMKW CTALNNEYFS AGILSSQRSE STNHAMGFQA 480 TKTTSVTEFF LDLLQHASEV YTLELFRVFE KEFTLAMGTR TSILSCSDSI FVYRVDPPTV 540 EDCSHHVTFD CGNKLVDCTC RKFQVMGMLC YHIIRVLHIH SIPQIPPMYI LARWSKSSKT 600 GVWNRLLPSD TRTTDANNAI NWRRSMLINL NNLLTKCQDV PDARTALQKI YGKANDEMQS 660 ILVTHNLDND QSAGQVQDST ILDPVRCTTK GRKKSNVSKR KKARKSIEDT PNNVEMYTPV 720 PRLI

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence Send to blast

MSNNKTKKPC TITFETENVI DLEKDASEED VFEGGGEDNP VDKEHDEGGV DDNLSDMKDF  60
DFSRSLVGVK AKSSEDLYEM YQKHSQVMGF STRKGTIRRV NGVGTPITQR YFLCSCQGEH  120
GGGSRRGLKG VSVQQKNALI TRSECKAWIR TLVNEAGLWE VVDHIIEHNH PLTPPQWQHH  180
HRSERRISEA EGEVIKAMTE TLVAPSVQFR VASAVAGGDT LVGHTKRDHI NFVNRLKMRS  240
IEGGDAATLI NLMNSRQAED PGFFFRVQFD EDGRLFNLFW HDSMMKEDYL LYHDVVIFDT  300
TYRTNRYNLI CGAFVGINNH WSNVMFGCSF LSDEKAESFE WLFNVFNESM GEDVRPVSIF  360
TDQDQAMSNA IEKVFPASRH RLCQWHIQQN AISHFGSLKH DRAFQKRFNK CLNGCYNETE  420
FEETWSNMIK DYNLHDHSWF KRLYNIKMKW CTALNNEYFS AGILSSQRSE STNHAMGFQA  480
TKTTSVTEFF LDLLQHASEV YTLELFRVFE KEFTLAMGTR TSILSCSDSI FVYRVDPPTV  540
EDCSHHVTFD CGNKLVDCTC RKFQVMGMLC YHIIRVLHIH SIPQIPPMYI LARWSKSSKT  600
GVWNRLLPSD TRTTDANNAI NWRRSMLINL NNLLTKCQDV PDARTALQKI YGKANDEMQS  660
ILVTHNLDND QSAGQVQDST ILDPVRCTTK GRKKSNVSKR KKARKSIEDT PNNVEMYTPV  720
PRLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	689	701	KGRKKSNVSKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010665808.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-87	FAR1-related sequence 5