PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20179.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 481aa    MW: 52220.7 Da    PI: 6.7966
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20179.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1092.2e-34216272259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vkgsefprsYY+Ct+++Cpv+kkvers  d++v+ei+Y+g+Hnh+
  Dca20179.1 216 NDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVRKKVERSL-DGQVIEIIYKGQHNHD 272
                 8****************************************.***************7 PP
2WRKY104.94.3e-33368426159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+a+dpk+v++tYeg+H+h+
  Dca20179.1 368 LDDGYRWRKYGQKVVKGNPYPRSYYKCTYAGCNVRKHVERAATDPKAVVTTYEGKHDHD 426
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-30210274IPR003657WRKY domain
SuperFamilySSF1182901.57E-26213274IPR003657WRKY domain
SMARTSM007745.0E-38215273IPR003657WRKY domain
PROSITE profilePS5081124.535216274IPR003657WRKY domain
PfamPF031062.1E-26216272IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-36354428IPR003657WRKY domain
SuperFamilySSF1182902.62E-29360428IPR003657WRKY domain
PROSITE profilePS5081137.769363428IPR003657WRKY domain
SMARTSM007742.6E-38368427IPR003657WRKY domain
PfamPF031061.6E-25369425IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAENDAVSHT KPPPPSAQSQ RPTLTLPARP GFESLLNGSS FGLSPGPMTL VSNFFSDHDP  60
DSDFRSFSQL LAGALSSPIP AVEPVGDHRV AGSGEGQNGF SMFLNGLSSA PLVDSPGVFG  120
NQGPFGTSHQ QALAQVTAQT QTDVHMQPSF QSTLGIDLSS SASASASFPG FGSLSSIQQN  180
MISTAPEPRD VKEPPRLNGS HQILQPSSIV VDKPANDGYN WRKYGQKQVK GSEFPRSYYK  240
CTHPSCPVRK KVERSLDGQV IEIIYKGQHN HDPPQKRSRD GVIANKASES VAYSSRRDQE  300
SSLATEEHSS SDEDEVGNDG ILESGGCDDE PDAKRRNMEV GVSEHAASHR MVAEPKIVVQ  360
TTSEVDLLDD GYRWRKYGQK VVKGNPYPRS YYKCTYAGCN VRKHVERAAT DPKAVVTTYE  420
GKHDHDVPAA RTSSYNTANN IAAQTRPYSS GRNSNTPIVE TDFTLNKQPV ALLKLKDERF  480
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41216429878Probable WRKY transcription factor 4
2lex_A2e-41216429878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839037.10.0probable WRKY transcription factor 3
SwissprotQ9XI901e-135WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0K9R3N80.0A0A0K9R3N8_SPIOL; Uncharacterized protein
STRINGXP_010683088.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-125WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]