PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20405.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 484aa    MW: 53723.6 Da    PI: 7.1986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20405.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09279326455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Dca20405.1 279 SHSLAERVRREKISERMRYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 326
                 8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.25E-9273330No hitNo description
SuperFamilySSF474591.57E-16273342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17275342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-7279326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-9281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MNIAYQDMLH CQNTANVAGV PGMELSVLEQ QNIVLKRQHV QNLQLQQPSQ QQQELSCFNE  60
LSMLSFLPPQ PHELHSLNVD CGAMLSELMN RPIKADPSME NGWTDFGIQQ SGLTVRHSGV  120
ESASQVNSPS YGTNIAISRT ASCPPIVPVV TAAIKTDQDV MGRDSATPER KLNAAAGRES  180
FNKRKAAEKS LTIPKVKDVE VNNSKRSKVR ATEEESKITE QHSNRNCSQS KQKHITGIKI  240
DGKEKETSGC TSKDNSKASE VQKPDYIHVR ARRGQATDSH SLAERVRREK ISERMRYLQD  300
LVPGCNKITG KAGMLDEIIN YVQSLQRQVE FLSMKLAAVS PRLELNIDDL IAREILAACS  360
SSLPTIGVSP DLSNPNYPQY NPIQQMDQIC GSETVANSID MRIRRSISTP VSMPENFFDT  420
SCFNQLQNSI QWDADLQNLY SIEFQQGIST STPFQAATAY LMSQQKINVA YYIGISYSPQ  480
PAIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021731578.10.0transcription factor HBI1-like
TrEMBLA0A0K9QN270.0A0A0K9QN27_SPIOL; Uncharacterized protein
STRINGXP_010690861.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.17e-61cryptochrome-interacting basic-helix-loop-helix 1