PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca20417.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 366aa MW: 39743.1 Da PI: 7.0018

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca20417.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.2	3.8e-13	120	165	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++ + ++lG+g+W+ Iar Rt+ q+ s+ qky Dca20417.1 120 KPWTEEEHRLFLIGLQKLGKGDWRGIARSYVVSRTPTQVASHAQKY 165 58*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.246	114	170	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-16	116	171	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-18	117	169	IPR006447	Myb domain, plants
SMART	SM00717	6.7E-10	118	168	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.5E-11	118	164	IPR009057	Homeodomain-like
Pfam	PF00249	8.7E-11	120	165	IPR001005	SANT/Myb domain
CDD	cd00167	4.01E-9	121	166	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MTRRCSHCSN NGHNSRTCPT RATTAGGGSS GGGGGGVKLF GVRLTDGSFM KKSASMGNLS 60 HYYNNNNQGS STSAATSPGL DQPGSPPVHD PVRDGYLSDD PTHHVSCSSS NRRGERKKGK 120 PWTEEEHRLF LIGLQKLGKG DWRGIARSYV VSRTPTQVAS HAQKYFIRQS NATRRKRRTS 180 LFDMVPDMVT EEPENVPDEQ SVPAQPEPRE TDNSNALPSL DLSLGTESEP MEATSTEEVK 240 ETQENQPLPN NIPLPPIPAF FVPLPYPPIW QQSSYPPEEN TKPESFHHQV LKPTPVHLKE 300 PVDVDHLMGM SQLNLSEAEN GLPAQPQVQL SLNILGGPSR QSAFHASAPS SSSELKEGKS 360 SVIPAA

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MTRRCSHCSN NGHNSRTCPT RATTAGGGSS GGGGGGVKLF GVRLTDGSFM KKSASMGNLS  60
HYYNNNNQGS STSAATSPGL DQPGSPPVHD PVRDGYLSDD PTHHVSCSSS NRRGERKKGK  120
PWTEEEHRLF LIGLQKLGKG DWRGIARSYV VSRTPTQVAS HAQKYFIRQS NATRRKRRTS  180
LFDMVPDMVT EEPENVPDEQ SVPAQPEPRE TDNSNALPSL DLSLGTESEP MEATSTEEVK  240
ETQENQPLPN NIPLPPIPAF FVPLPYPPIW QQSSYPPEEN TKPESFHHQV LKPTPVHLKE  300
PVDVDHLMGM SQLNLSEAEN GLPAQPQVQL SLNILGGPSR QSAFHASAPS SSSELKEGKS  360
SVIPAA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010665911.1	1e-160	PREDICTED: transcription factor MYB1R1
Swissprot	Q7XC57	6e-93	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A0J8B933	1e-159	A0A0J8B933_BETVU; Uncharacterized protein
STRING	XP_010665911.1	1e-159	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	5e-86	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]