PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca20462.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 371aa MW: 42088.7 Da PI: 8.0695

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca20462.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	32	4.1e-10	190	276	2	75
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgk 75 Y+++++ vGFs+rks++++ n +t++ f Cs+egk++++k + k+r++ ++trt C+a l+vk+ +++ Dca20462.1 190 LYKQHSRAVGFSIRKSTTRRIgGVNSLVTEKYFLCSCEGKAKSQKLIqtctddnslapgEIKKRKRVSSTRTCCQAFLRVKLLFNKR 276 7**************9999778999**********99887789*****999999999************987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04827	9.5E-57	24	148	IPR006912	Harbinger transposase-derived protein
Pfam	PF03101	2.7E-8	190	274	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016788	Molecular Function	hydrolase activity, acting on ester bonds

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MSETVVRDSL MHFVQGVISN FGNQYLRRPN LSDVARLLHI GQTRGFPGML GSIDCMHWEW 60 KNCPIAWSGQ YAGRSSKATI ILEAVASYDL WICHAFFDTP GSLNDINVLQ RSPVFEDNLE 120 ESGPPVHFMV NGNEYNLRYF LADGDYVEVE CCSEGDLQNS TDNPLIPEGF DISGSLVGIK 180 SRSWRELYEL YKQHSRAVGF SIRKSTTRRI GGVNSLVTEK YFLCSCEGKA KSQKLIQTCT 240 DDNSLAPGEI KKRKRVSSTR TCCQAFLRVK LLFNKRERER RLPGQRRYEL VPDVYEVVSH 300 VVAHNHTLTS PRWQHHHRSE RQISEEEGAL IQVMTDARVP AAVQYRFLSR SCGGDENVGH 360 TQKITSILLI G

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MSETVVRDSL MHFVQGVISN FGNQYLRRPN LSDVARLLHI GQTRGFPGML GSIDCMHWEW  60
KNCPIAWSGQ YAGRSSKATI ILEAVASYDL WICHAFFDTP GSLNDINVLQ RSPVFEDNLE  120
ESGPPVHFMV NGNEYNLRYF LADGDYVEVE CCSEGDLQNS TDNPLIPEGF DISGSLVGIK  180
SRSWRELYEL YKQHSRAVGF SIRKSTTRRI GGVNSLVTEK YFLCSCEGKA KSQKLIQTCT  240
DDNSLAPGEI KKRKRVSSTR TCCQAFLRVK LLFNKRERER RLPGQRRYEL VPDVYEVVSH  300
VVAHNHTLTS PRWQHHHRSE RQISEEEGAL IQVMTDARVP AAVQYRFLSR SCGGDENVGH  360
TQKITSILLI G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	1e-07	FAR1-related sequence 11