PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20472.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 274aa    MW: 32117.4 Da    PI: 4.8383
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20472.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-1959113256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  ++++f+++q++ Le+ Fe++ +++ +++ e Ak+lgL+ rqV +WFqN+Ra++k
  Dca20472.1  59 NNKRRFSDQQVRSLESIFESETKLDPRKKIEVAKELGLQPRQVAIWFQNKRARWK 113
                 67889*************************************************9 PP
2HD-ZIP_I/II116.91.2e-3760151293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +krr+s++qv++LE+ Fe+e+kL+p++K e+a+eLglqprqva+WFqn+RAR+k+kq+Ek+y++Lk++yd+lk + e+L+k++e+L  +l+e
   Dca20472.1  60 NKRRFSDQQVRSLESIFESETKLDPRKKIEVAKELGLQPRQVAIWFQNKRARWKSKQIEKNYRVLKSNYDHLKVKLESLRKDKESLLIQLQE 151
                  79************************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-1853116IPR009057Homeodomain-like
PROSITE profilePS5007118.13955115IPR001356Homeobox domain
SMARTSM003894.5E-1857119IPR001356Homeobox domain
PfamPF000462.5E-1658113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-1963113IPR009057Homeodomain-like
CDDcd000861.50E-1464116No hitNo description
PRINTSPR000311.6E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.6E-595111IPR000047Helix-turn-helix motif
PfamPF021831.5E-12115155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMQGIIRDLS IIEGDDIDSL SLDNEEEEVE EVEEEDDDND LSSNNKKKTK KKKKNRNRNN  60
KRRFSDQQVR SLESIFESET KLDPRKKIEV AKELGLQPRQ VAIWFQNKRA RWKSKQIEKN  120
YRVLKSNYDH LKVKLESLRK DKESLLIQLQ ELRNEVNKRP YEGRCEDYCM TNNNQDNKEN  180
NNNNNTTLLA TKSSNLQEEI MDHQQGVVYS DDDKSGNNNM AAFLGQGDEE SRLLDDIREN  240
IDGSIVSPTK WCNFDATSLF DQSSSSTHWW DSWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14962KKKKKNRNRNNKRR
25061KKKKNRNRNNKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858019.12e-85homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0K9QS269e-85A0A0K9QS26_SPIOL; Uncharacterized protein
STRINGXP_010666163.12e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-43homeobox 7