PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20557.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 297aa    MW: 32490.6 Da    PI: 8.9834
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20557.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.4e-1259103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W++ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       Dca20557.1  59 RESWSEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 103
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1553109IPR009057Homeodomain-like
PROSITE profilePS5129413.85554108IPR017930Myb domain
TIGRFAMsTIGR015574.8E-1857106IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-55899IPR009057Homeodomain-like
SMARTSM007171.4E-958106IPR001005SANT/Myb domain
PfamPF002499.4E-1059103IPR001005SANT/Myb domain
CDDcd001672.19E-761104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVSMNPSSPE GFYLDSTGGA LPGVNPFTAD FAAVEMVSSP TDESNCKKVR KPYTISKSRE  60
SWSEPEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKS GSHEHLPPPR  120
PKRKAAHPYP QKAHKNVATA SVQTSPSFLE PGNERADPTS TPRYQGSTAA VSSSAANSQT  180
VGRPNAIEGD MKSPRPTIAV NNCSSSAEST PMARTAVGLN EAVKHGSPLK VLPDFAQVYS  240
FIGSIFDPAT SGHLQKLKKM DPIDVETALL LMRNLSINLS SPDFEDHRRM LSSYDTD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844199.11e-149protein REVEILLE 6-like isoform X1
RefseqXP_021844201.11e-149protein REVEILLE 6-like isoform X1
SwissprotQ8H0W31e-108RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0K9RE611e-141A0A0K9RE61_SPIOL; Uncharacterized protein
STRINGXP_010671614.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-92MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]