PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20625.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 287aa    MW: 33500 Da    PI: 7.9852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20625.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.2e-071337123
                EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                ++Cp  dC+ s++rk++L+rH+  H
  Dca20625.1 13 FVCPvdDCNASYRRKDHLNRHLIQH 37
                89*******************9877 PP
2zf-C2H215.26.1e-054267123
                EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                +kCp  +C k F+ + n  rH++  H
  Dca20625.1 42 FKCPveNCEKEFTVQGNIARHLKEfH 67
                89*********************988 PP
3zf-C2H218.84.5e-0681105123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk F+  s+L++H  +H
  Dca20625.1  81 HVCQknGCGKEFKYASQLQKHEESH 105
                 789999***************9988 PP
4zf-C2H2120.00064114136423
                 T..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   4 p..dCgksFsrksnLkrHirt.H 23 
                    dC k Fs+++ L+ H+r+ H
  Dca20625.1 114 AdpDCMKAFSNRECLQAHMRScH 136
                 455999***************66 PP
5zf-C2H217.79.8e-06169193223
                 EET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                 kC+   C+ sF ++snL++H +  H
  Dca20625.1 169 KCNfdGCDHSFATSSNLRQHVKAvH 193
                 79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.29E-71039No hitNo description
Gene3DG3DSA:3.30.160.601.5E-101039IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.5E-41337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.641342IPR007087Zinc finger, C2H2
PROSITE patternPS0002801537IPR007087Zinc finger, C2H2
SuperFamilySSF576677.85E-64068No hitNo description
Gene3DG3DSA:3.30.160.601.4E-54064IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0324272IPR007087Zinc finger, C2H2
SMARTSM003550.0264267IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804467IPR007087Zinc finger, C2H2
SuperFamilySSF576676.7E-672106No hitNo description
Gene3DG3DSA:3.30.160.601.6E-675105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.55481110IPR007087Zinc finger, C2H2
SMARTSM003550.00481105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083105IPR007087Zinc finger, C2H2
SMARTSM003550.91111136IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829111136IPR007087Zinc finger, C2H2
PROSITE patternPS000280113136IPR007087Zinc finger, C2H2
SMARTSM0035517139160IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.63E-9151206No hitNo description
PROSITE profilePS5015712.05168198IPR007087Zinc finger, C2H2
SMARTSM003554.6E-4168193IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-8169193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280170193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-4194222IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.8199225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MVVLYSVFLQ RPFVCPVDDC NASYRRKDHL NRHLIQHEGK LFKCPVENCE KEFTVQGNIA  60
RHLKEFHEGK PYVRHEELKK HVCQKNGCGK EFKYASQLQK HEESHVESCE AFCADPDCMK  120
AFSNRECLQA HMRSCHQYII CEVCGSKHLR KNYKRHLRSH DDNTNEVLKC NFDGCDHSFA  180
TSSNLRQHVK AVHLNLRPFT CSFPGCGMSF AFKHVRDNHE KSFRHVHVPG DLEEFDEEWR  240
SRPHGGRKRK CPTVEMLMSK RVTPPNECDS VLNHSAEYLS WLLSADD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A4e-121022219183Aart
2i13_B4e-121022219183Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241249RPHGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021745786.11e-150transcription factor IIIA-like isoform X1
RefseqXP_021745787.11e-151transcription factor IIIA-like isoform X2
SwissprotQ84MZ41e-92TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E81e-145A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.11e-145(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.13e-95transcription factor IIIA