PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2084.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 579aa    MW: 63057.9 Da    PI: 6.7181
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2084.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23125227199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                f k ltpsd+++ g +++p+ +a+++         ++ +  t++++d +g+++e+++iyr++++r++lt+GW++Fv++++L +gD+ vF +  + s++el
  Dca2084.1 125 FAKGLTPSDANNGGGFSVPRFCADSIfppldfeADPPVQ--TIRVRDVHGKTFEFRHIYRGTPRRHLLTTGWSKFVNSKKLVAGDSAVFIR--NkSTAEL 220
                8899*******************999*****95444444..9************************************************5..449999* PP

                EEEEE-S CS
         B3  93 vvkvfrk 99 
                +v+v+r+
  Dca2084.1 221 FVGVRRE 227
                ****996 PP
2Auxin_resp78.81.3e-26269351283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a +a+ ++vFev Y+Pr + +eFvv +e+ve++l+v ++ G R+kma+etedss+ ++ +Gtvv+ + +d+  +++S Wr+L+
   Dca2084.1 269 AGKAARGEVFEVEYYPRPGLPEFVVAAERVERSLSVFWTEGVRVKMAMETEDSSRVQWfQGTVVSAKVADSGVFRGSTWRMLE 351
                 6678999**************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-27120228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-30123227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.13E-20124226No hitNo description
PROSITE profilePS5086311.096125228IPR003340B3 DNA binding domain
SMARTSM010196.1E-16125228IPR003340B3 DNA binding domain
PfamPF023621.2E-21125227IPR003340B3 DNA binding domain
PfamPF065071.3E-22269350IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MTAATADHGG AVCGGERIWK ACAGTLVRIP AENTTAYYFP AGHLEQPPAS ISSVTSLSPE  60
ITSKPFIPCR VLHVSLLADK ETDEVFAKFR LQPINFVLEH SRTFVDEIDG DEVNGGGGGN  120
DVVSFAKGLT PSDANNGGGF SVPRFCADSI FPPLDFEADP PVQTIRVRDV HGKTFEFRHI  180
YRGTPRRHLL TTGWSKFVNS KKLVAGDSAV FIRNKSTAEL FVGVRREIKK PAVVNEGAYS  240
CWGPPQGYFR ASSGSRKGKA AVEKVVEAAG KAARGEVFEV EYYPRPGLPE FVVAAERVER  300
SLSVFWTEGV RVKMAMETED SSRVQWFQGT VVSAKVADSG VFRGSTWRML EVKWDEHESL  360
KNMNKVSPWQ VELIPPTPSI HAATYPPTKK IKYSTNSGLY DGEDKFPSPS AGFGSMMGQL  420
NSSYLIPHPF SAGMQGARHN QLLLSNLPNS INTDGTPQTH PEYHDISMSQ SSQRAESVPI  480
DLNVGKTPSS TPSPDSQNSV QLCCSTGTEK VGITSFQLFG KIIHTEQPPN SIDVDMSCNE  540
SDDGGAKGAE EVMDHTLADG YKKLHDKLSG QCERPPVVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A5e-671137218353Auxin response factor 1
4ldy_B5e-671137218353Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091086.11e-171auxin response factor 17 isoform X1
TrEMBLA0A067KCM51e-165A0A067KCM5_JATCU; Auxin response factor
STRINGXP_010672559.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-117auxin response factor 17