PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca20876.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 291aa MW: 32214.7 Da PI: 10.137

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca20876.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.1	8.7e-13	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v+++G+g W tI r R+ ++k++w++ Dca20876.1 5 KQKWTAEEEAALKAGVRKHGTGKWQTILRDPDfedvlRSRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.697	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.8E-16	2	59	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.7E-14	4	56	IPR009057	Homeodomain-like
SMART	SM00717	4.1E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-9	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	1.23E-18	6	57	No hit	No description
PROSITE profile	PS51504	23.123	115	186	IPR005818	Linker histone H1/H5, domain H15
SMART	SM00526	5.0E-15	116	181	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	1.25E-15	116	194	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.8E-14	117	185	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.4E-10	123	179	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV RKHGTGKWQT ILRDPDFEDV LRSRSNVDLK DKWRNINVTL 60 SGLGSREKAR LALKRNPRLP KLEDKVTVAN TTEVDEKLSE AKSVVPYDAA HAALQKKTYT 120 RLDNVIMEAV TAIKEPKGSD RNTIAMYIEE RYQTPPNFSM RLNSKLKSLT ANGQISKVKH 180 KYRITANLLS SEPAIKSSSD DKLLDRSTKS QRRELKIFTR PQVDEDLAKM KSMSAQAAAA 240 AAAQAVAEAE FATAEAEKAQ REAEAAEAEA DAARAFAEAA MMALRCQKLQ A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857040.1	1e-105	telomere repeat-binding factor 1-like
TrEMBL	A0A0K9QIN7	1e-104	A0A0K9QIN7_SPIOL; Uncharacterized protein
STRING	XP_010684267.1	1e-104	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-64	telomere repeat binding factor 1