PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca20882.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 273aa    MW: 30847.7 Da    PI: 7.9204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca20882.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-07150194955
                 HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++RR+ i ++++e+ ellP  +   ++kK + ++i   A  YIk+L+
  Dca20882.1 150 AQNRRSIIAEKMQEIHELLPAsS---KAKKGDYIAIIDDALAYIKYLR 194
                 589******************55...********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.845141193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-7148201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-4148195No hitNo description
Gene3DG3DSA:4.10.280.101.2E-6148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-5151193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKRFKAAVGG GRRQEAVVVG VGRTSAWVAG RWGPAVSLSL LLLDLMGFLK LVCVCDVVLL  60
PQQSNSLLVQ VKMEEAYELH SFMNHEASAS SPPPRRSSRV YRRQRSRAAE RESVHEIALT  120
QQILDFLISF TVLPKLENLI NHARADCVVA QNRRSIIAEK MQEIHELLPA SSKAKKGDYI  180
AIIDDALAYI KYLREHIMEA CMRKLGYESV SAPLSFMEGY RHYYPQEPIA EEPAEEVFRN  240
LIENDPATAF RLMESQGLYL VPITFIDTLH CSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-