PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca20963.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YC

Protein Properties

Length: 286aa MW: 31374.5 Da PI: 4.8006

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca20963.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.3	8e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ ++ + +fdfl d+v + Dca20963.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITLQRGAKTVNSLHLKHCIHSFSTFDFLKDVVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	4.92E-20	3	89	IPR009072	Histone-fold
Pfam	PF00808	1.2E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITLQRGAK 60 TVNSLHLKHC IHSFSTFDFL KDVVSKVPDY GNADASGDNH SAIKRRKSST DEYHDSDEES 120 KKSRMEVSPT SSSSGRGRGR GRGRGRGRGR PPVDRDPTPA THHETESQPS TPFESIAKPS 180 PVEVPTIDAD PNEDLMKESP VVGHAADMAS RNFDLNAKVI ENQDTASTTT SVPAENAADA 240 SSAEPLPSET KNEELVSEVD GMAIDPHQIA QFNSRVDEDD DYDEED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-22	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	148	RGRGRGRGRG
2	139	149	RGRGRGRGRGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010670583.1	1e-126	PREDICTED: dr1-associated corepressor
TrEMBL	A0A0K9RC39	1e-121	A0A0K9RC39_SPIOL; Uncharacterized protein
STRING	XP_010670583.1	1e-126	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-64	nuclear factor Y, subunit C11