PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21013.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 311aa    MW: 35046.4 Da    PI: 6.526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21013.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.31.8e-10121166555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+ + ++f  L  ++P +     kK++K +iL  A++Y+++Lq
  Dca21013.1 121 HIMAERKRREFLTQKFIALSAIVPGL-----KKVDKTTILVGAINYLQQLQ 166
                 999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.23116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-15116185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.89E-9121170No hitNo description
Gene3DG3DSA:4.10.280.102.2E-15121181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-8121166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.83E-5238302No hitNo description
PROSITE profilePS5167110.853242311IPR002912ACT domain
CDDcd021160.00716243300No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEAWLSELEK AWNSEEQDNN NPEETMNTLS QELDHILGEE FPSLFAENSS PNINRNTENP  60
PTKLSRGPST TQISPLILCN IGVKRPINNN NVAPKDQKEN KQQKENGKKR RKREPSQTYD  120
HIMAERKRRE FLTQKFIALS AIVPGLKKVD KTTILVGAIN YLQQLQQKVK TLEEEMATKQ  180
NEETTMVVRR SQLVVDYDDD DDSSACTDDE SCGFSSSGGG PGGYKDTSLP HIEVKVSNKS  240
LLLTIYCENR KGISSQIFSE LDRHEIVVLN TNTMPFGNSA LYITIVAQTE RTDKKHVKNL  300
VKGVISVLRG H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111KKRRK
2110128RKREPSQTYDHIMAERKRR
3124129ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.11e-36bHLH family protein