PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca21085.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

M-type_MADS

Protein Properties

Length: 368aa MW: 40605.1 Da PI: 3.9555

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca21085.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41	2.4e-13	20	47	15	42
HHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifss 42 R+++i+KKA+ELS+LC+++va+i + s Dca21085.1 20 LRKTTIFKKAKELSTLCGVDVALIFYDS 47 5***********************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.7E-6	1	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.937	9	58	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.67E-12	19	73	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.0E-11	21	47	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MKRSTVIDDQ RKREKLNKTL RKTTIFKKAK ELSTLCGVDV ALIFYDSGEQ TPESWSSRPD 60 GVSVINKYLS FTNQPQIALP RIQPLDIVDE ECRAVRDREF INNLGFEDFN GFASLLAVKI 120 ENLNQRINVL READVGQLQF TDTTNELNVD DFEFTFDDLD GLELNDLGFQ NITSDDHLLR 180 QPPSDLPSPS VLGNVDFTFD GLESFSLDDL EFGMTSATDQ VQVESPSVYG GVDLGFDGVK 240 GFSLDDLVFG TTSATDQVQL ESPSVYGGVD LGFDGVKGFS LDDLVFGTTS AFDHVEEGSP 300 LVYDSLGNLE FVDDDVDWMN ALMTCIRRKS TPTACSLQEA VKSVNVRSMA PSVVSEVLTS 360 ESPSTVEQ

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MKRSTVIDDQ RKREKLNKTL RKTTIFKKAK ELSTLCGVDV ALIFYDSGEQ TPESWSSRPD  60
GVSVINKYLS FTNQPQIALP RIQPLDIVDE ECRAVRDREF INNLGFEDFN GFASLLAVKI  120
ENLNQRINVL READVGQLQF TDTTNELNVD DFEFTFDDLD GLELNDLGFQ NITSDDHLLR  180
QPPSDLPSPS VLGNVDFTFD GLESFSLDDL EFGMTSATDQ VQVESPSVYG GVDLGFDGVK  240
GFSLDDLVFG TTSATDQVQL ESPSVYGGVD LGFDGVKGFS LDDLVFGTTS AFDHVEEGSP  300
LVYDSLGNLE FVDDDVDWMN ALMTCIRRKS TPTACSLQEA VKSVNVRSMA PSVVSEVLTS  360
ESPSTVEQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27960.1	6e-10	AGAMOUS-like 90