PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca211.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 327aa    MW: 36114.6 Da    PI: 9.8313
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca211.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.1e-14134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +q G+g+W+ I+r + k+R++ q+ s+ qky
         Dca211.1 134 PWTEEEHRLFLVGLNQVGKGDWRGISRNFVKTRSPTQVASHAQKY 178
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.3231227IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.246127183IPR017930Myb domain
SuperFamilySSF466898.22E-17129183IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-15130181IPR006447Myb domain, plants
SMARTSM007175.6E-10131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-10133178IPR009057Homeodomain-like
PfamPF002491.2E-10134178IPR001005SANT/Myb domain
CDDcd001676.03E-9134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTGQSIKIPR TCSQCGNNGH NARTCPDHTV TPSNYNTNIN TNTSNGNNGV MLFGVRLTHS  60
VAENSTASPQ RPIESSSLSG FRKCMSMNNL AQYEQQQQQQ QQQQGNNCHD SGYASDDGIH  120
ASGGRNRERK RGVPWTEEEH RLFLVGLNQV GKGDWRGISR NFVKTRSPTQ VASHAQKYFL  180
RRTNLNRRRR RSSLFDITTD TMTRSASADQ LHNLDTTFQQ NQVTNQPTLF STPCTPTNLL  240
PNLAKHDNSM RTTAPVPPSV KMANLNLNQS PSSSPASSTS TNTTRERELE SFLSLKLEHA  300
PSDEAESSGL SNFGGFNGNR DNTISVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00630PBMTransfer from PK17526.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683349.17e-90PREDICTED: transcription factor MYB1R1
TrEMBLA0A0K9R9Z71e-86A0A0K9R9Z7_SPIOL; Uncharacterized protein
STRINGXP_010683349.13e-89(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.25e-59MYB_related family protein