PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21302.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 499aa    MW: 55202.5 Da    PI: 5.2684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21302.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12290331854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  E++RR++ N++++ L++l+P++     +K + a+i+  A+ YI++L
  Dca21302.1 290 TEKQRRQNFNTKYDLLKKLIPTP-----TKADRASIVHDAIAYINEL 331
                 7**********************.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.192282331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-10288337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-11289341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-12289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9290331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-10291336No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MYDLQTDAAF ACFDPNIINN NNNIDNSNNN NFNNSDNNNN ISLQQIDSNS MALDFQNPSN  60
EYNDWTVTNN NNNNNNRDTV SHEMGYTQFD ETTLHQTTAT TDLLTLLHLP RCTFASSSTS  120
SPPPPPPPGL AAFLGEMKPS IHMNMMHHEG IPPPPPPPPG SYDPLFHLNL PPQPSPLLRD  180
LMFHGYPANS GVPLRGGGGT NNNNCPSSLF AQMDDPESGG TNMNPMSMNM NMNMNFNGIP  240
GLYVENGGDQ QQQQQHMMMM SSENGVFEFT SGASLDNDGN LVKSPKGFVT EKQRRQNFNT  300
KYDLLKKLIP TPTKADRASI VHDAIAYINE LKRTVSDLKL LVQKKRISND RVKRLKTEEN  360
NPSDDPENKS SHGPDGPVGV VKPDPDDALV GQLRSSWLQR KCKDTEIDVR IVDDEVTIKL  420
VQRKKMNCLL SVSRTLDDLQ LDLRHVAGGH VGDYYSYLFN SKICEGSSVY ASAIANKLID  480
VVERQYAAAS VAVAPTTSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850497.11e-120transcription factor bHLH91-like
TrEMBLA0A0K9R3E51e-119A0A0K9R3E5_SPIOL; Uncharacterized protein
STRINGXP_010691929.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-64bHLH family protein