PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca2137.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 784aa    MW: 89542.1 Da    PI: 8.0776
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca2137.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-18417470356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Dca2137.1 417 KKRRLNMEQVKTLEKNFELGKKLEPERKMQLAKGLGLQPRQVAIWFQNRRARWK 470
                456899***********************************************9 PP
2Homeobox56.45e-18729782356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k+++++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Dca2137.1 729 KKRRLNMEQVKTLEKNFELGKKLEPERKMQLAKGLGLQPRQVAIWFQNRRARWK 782
                456899***********************************************9 PP
3HD-ZIP_I/II104.21.1e-33416495180
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                  ekkrrl+ eqvk+LE++Fe  +kLeperK++la+ Lglqprqva+WFqnrRAR+ktkqlEkdye    ay+  + ++e+L
    Dca2137.1 416 EKKRRLNMEQVKTLEKNFELGKKLEPERKMQLAKGLGLQPRQVAIWFQNRRARWKTKQLEKDYEGWAVAYKGSEWDQEKL 495
                  69*************************************************************98777776666666555 PP
4HD-ZIP_I/II87.12.3e-28728784157
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktk 57 
                  ekkrrl+ eqvk+LE++Fe  +kLeperK++la+ Lglqprqva+WFqnrRAR+ktk
    Dca2137.1 728 EKKRRLNMEQVKTLEKNFELGKKLEPERKMQLAKGLGLQPRQVAIWFQNRRARWKTK 784
                  69*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077275.0E-64128293IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566724.89E-9134289No hitNo description
SuperFamilySSF466891.5E-18407474IPR009057Homeodomain-like
PROSITE profilePS5007116.779412472IPR001356Homeobox domain
SMARTSM003899.9E-17415476IPR001356Homeobox domain
CDDcd000861.74E-15417473No hitNo description
PfamPF000462.3E-15417470IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-18419472IPR009057Homeodomain-like
PRINTSPR000318.4E-5443452IPR000047Helix-turn-helix motif
PROSITE patternPS000270447470IPR017970Homeobox, conserved site
PRINTSPR000318.4E-5452468IPR000047Helix-turn-helix motif
Gene3DG3DSA:3.20.110.106.6E-11473535IPR027291Glycoside hydrolase 38/57, N-terminal domain
SuperFamilySSF887138.15E-8480543IPR011330Glycoside hydrolase/deacetylase, beta/alpha-barrel
PfamPF010741.5E-6496534IPR000602Glycoside hydrolase family 38, N-terminal domain
SuperFamilySSF466894.71E-18713783IPR009057Homeodomain-like
PROSITE profilePS5007116.779724784IPR001356Homeobox domain
SMARTSM003894.4E-11727784IPR001356Homeobox domain
CDDcd000863.40E-15729784No hitNo description
PfamPF000462.3E-15729782IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-18736782IPR009057Homeodomain-like
PROSITE patternPS000270759782IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0004559Molecular Functionalpha-mannosidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MFGHYFYSPT EHRVFVAASA TFLEKEFLEY KRGNRTFDLS EIPEPTTEQP MEETVPSTSA  60
AVNIPLEPRR SGRLSIPPDR YIGIVEENGR DDVLLLESNE PVTYKGAMTC SDSKLWQEAM  120
QSEMDSMYEN HLYKIKRSVE GQPDIYKARL VAKGFTQVQG LHYDEIFAPV VMLRSIRILL  180
AIAAFHDYEI WQMDVKTAFL NGYLEEELYM VQPEGFIDPK DPKKVCRLKR SIYGLKQASR  240
SWNHRFDQVI KENGFTRSVE EPCLYIKSSG SKIVFLILYV DDILLIENDI PLLTSTWHLK  300
WVLTYGGAIR LCAISCVDAN FHTNRDDSIS QLGFVFTLYG SRVPYASAVG SIMYAVMCSR  360
ADVASEMGQG GMTPMLGKRS MSFSGIDMCE DTNGNNNNVG DEDLSDDGSQ LGGVGEKKRR  420
LNMEQVKTLE KNFELGKKLE PERKMQLAKG LGLQPRQVAI WFQNRRARWK TKQLEKDYEG  480
WAVAYKGSEW DQEKLKIIVV PHSDNDPGWK LTLDEYYDRK SRHILDTIVE SLSKGWWLHL  540
TREPVVFCCT SRNRFRNLLR KTEGDRAMWE SPFAVAGVNI IFMLIQMLDF TTPADVILGS  600
ESANLVKVFL VVTKVVYGRV TLDTTGRNAP MLVGNLVSIL SVGAIHAVCS FLRRQNYDQD  660
TTKKIVTVQK DMDELPIEEF AEEKLRKAKM WILKWGLGLT AVIVIIWPVL SLPADLSDDG  720
SQLGGVGEKK RRLNMEQVKT LEKNFELGKK LEPERKMQLA KGLGLQPRQV AIWFQNRRAR  780
WKTK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464472RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-42HD-ZIP family protein