PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21608.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 194aa    MW: 22647.2 Da    PI: 4.601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21608.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.5e-3161281128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 
                 lppGfrF Ptdeelvv++L+++    +++  +vi+++++y ++PwdL+ k+  e ++ y++s+r         +nr+t+ gyWk+ g d++++s+   +
  Dca21608.1   6 LPPGFRFFPTDEELVVHFLHRRDGILPFRP-DVIPDLELYPYNPWDLEGKALREGSKSYYYSRRV--------QNRVTECGYWKQMGMDEPIMSStnMN 95 
                 79*************************999.99**************96666778899***9984........58*******************97666 PP

         NAM  98 elvglkktLvfykg..rapkgektdWvmheyrl 128
                 + vg+kk  vf+ g  ++ +g  t+W+mhey+l
  Dca21608.1  96 KMVGIKKYYVFHFGepHNTSGDWTNWIMHEYSL 128
                 77**********5533788899*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-394161IPR003441NAC domain
PROSITE profilePS5100540.2846161IPR003441NAC domain
PfamPF023653.3E-207128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MADNNLPPGF RFFPTDEELV VHFLHRRDGI LPFRPDVIPD LELYPYNPWD LEGKALREGS  60
KSYYYSRRVQ NRVTECGYWK QMGMDEPIMS STNMNKMVGI KKYYVFHFGE PHNTSGDWTN  120
WIMHEYSLPE TASSSSRSSS KRRSNSKKDF SRWVICKVYE QGDDDGDGDE EAELSCLDEV  180
FLSMEDLEEI SLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-30116112165NO APICAL MERISTEM PROTEIN
1ut4_B8e-30116112165NO APICAL MERISTEM PROTEIN
1ut7_A8e-30116112165NO APICAL MERISTEM PROTEIN
1ut7_B8e-30116112165NO APICAL MERISTEM PROTEIN
3swm_A9e-30116115168NAC domain-containing protein 19
3swm_B9e-30116115168NAC domain-containing protein 19
3swm_C9e-30116115168NAC domain-containing protein 19
3swm_D9e-30116115168NAC domain-containing protein 19
3swp_A9e-30116115168NAC domain-containing protein 19
3swp_B9e-30116115168NAC domain-containing protein 19
3swp_C9e-30116115168NAC domain-containing protein 19
3swp_D9e-30116115168NAC domain-containing protein 19
4dul_A8e-30116112165NAC domain-containing protein 19
4dul_B8e-30116112165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687465.12e-91PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK63e-72NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1B2RWF35e-94A0A1B2RWF3_9CARY; NAC transcription factor 42
STRINGXP_010687465.18e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.12e-71xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]