PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca21615.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 163aa MW: 18102.7 Da PI: 7.8416

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca21615.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.4	3.3e-45	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la++++ Dca21615.1 9 PCASCKLLRRRCAKDCTFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARMRDPVYGCVGAISFLQNQVSQLQMQLAVAHA 107 7**********************************************************************************************9998 PP DUF260 100 e 100 e Dca21615.1 108 E 108 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.464	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.8E-44	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MGANGTSSPC ASCKLLRRRC AKDCTFAPYF PSDDPHKFAI VHKVFGASNV SKMLQELPVH 60 QRADAVSSLV YEANARMRDP VYGCVGAISF LQNQVSQLQM QLAVAHAELL CIQMQQEPSN 120 ISNTAQSIFV SDNDKSFLFQ NSLSYNNHLY LESSISRHLT IIM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-51	5	110	7	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-51	5	110	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692935.1	3e-85	PREDICTED: LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-74	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A0K9QFW0	2e-82	A0A0K9QFW0_SPIOL; Uncharacterized protein
STRING	XP_010692935.1	1e-84	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-77	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]