PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca21702.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 160aa MW: 18094.9 Da PI: 9.1057

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca21702.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.1	1.7e-49	26	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 + pGfrF+Ptdeel+ +yLkkk++g + + evi++vdi+k+ePwdLp k++ ++++ew+fFs+r kky++g++++ at+ gyWkatgk+++v+s +++ Dca21702.1 26 MFPGFRFSPTDEELILYYLKKKLDGFDKCV-EVIPQVDICKFEPWDLPaKSIISSDQEWFFFSPRGKKYPNGSQSKSATEIGYWKATGKERAVKS-GSN 122 579*********************9777.99***********777788999**********************************9.99 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g+k+tLvf+ grapkge+t+W+mhey + Dca21702.1 123 VIGTKRTLVFHIGRAPKGERTEWIMHEYCM 152 ****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-54	18	156	IPR003441	NAC domain
PROSITE profile	PS51005	49.106	26	160	IPR003441	NAC domain
Pfam	PF02365	2.3E-25	28	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGDVDKEKMK GVVTKEAEIS IAASSMFPGF RFSPTDEELI LYYLKKKLDG FDKCVEVIPQ 60 VDICKFEPWD LPAKSIISSD QEWFFFSPRG KKYPNGSQSK SATEIGYWKA TGKERAVKSG 120 SNVIGTKRTL VFHIGRAPKG ERTEWIMHEY CMIGKGQVIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-45	25	153	16	143	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-45	25	153	16	143	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-45	25	153	16	143	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-45	25	153	16	143	NO APICAL MERISTEM PROTEIN
3swm_A	4e-45	21	153	15	146	NAC domain-containing protein 19
3swm_B	4e-45	21	153	15	146	NAC domain-containing protein 19
3swm_C	4e-45	21	153	15	146	NAC domain-containing protein 19
3swm_D	4e-45	21	153	15	146	NAC domain-containing protein 19
3swp_A	4e-45	21	153	15	146	NAC domain-containing protein 19
3swp_B	4e-45	21	153	15	146	NAC domain-containing protein 19
3swp_C	4e-45	21	153	15	146	NAC domain-containing protein 19
3swp_D	4e-45	21	153	15	146	NAC domain-containing protein 19
4dul_A	4e-45	25	153	16	143	NAC domain-containing protein 19
4dul_B	4e-45	25	153	16	143	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in plant cell division. {ECO:0000269\|PubMed:16803883}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021859686.1	8e-97	NAC domain-containing protein 89-like
Swissprot	Q94F58	6e-74	NAC89_ARATH; NAC domain-containing protein 89
TrEMBL	A0A0K9RI70	2e-95	A0A0K9RI70_SPIOL; Uncharacterized protein
STRING	XP_010668790.1	4e-93	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	1e-70	NAC domain containing protein 89

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]