PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21838.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 183aa    MW: 21351.5 Da    PI: 9.7709
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21838.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g WT  Ede+l+ av ++G ++W +I++ +  ++++kqck rw+ +l
       Dca21838.1  8 GVWTNTEDEILKSAVSKYGENQWPRISSLLV-RKSPKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding28.53.4e-0961103348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       W  e+de+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
       Dca21838.1  61 EWRREDDERLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      699***************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.912257IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-17555IPR009057Homeodomain-like
SMARTSM007171.1E-15655IPR001005SANT/Myb domain
PfamPF139214.6E-141070No hitNo description
CDDcd001671.21E-121053No hitNo description
SuperFamilySSF466891.38E-1933112IPR009057Homeodomain-like
CDDcd116597.80E-2955107No hitNo description
Gene3DG3DSA:1.10.10.607.0E-1256104IPR009057Homeodomain-like
SMARTSM007172.8E-858105IPR001005SANT/Myb domain
PROSITE profilePS5129412.36958107IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MRITIKGGVW TNTEDEILKS AVSKYGENQW PRISSLLVRK SPKQCKARWY EWLHPSINKI  60
EWRREDDERL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDLAVNAV SSSKQGDDPR  120
KLRPAEIDPK PESKPARPDP VDMDDEDEKE VLAFLQKKRE LKATGIIDAR RRGIDYNAYK  180
HIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L2e-7621783212Cell division cycle 5-like protein
5xjc_L2e-7621783212Cell division cycle 5-like protein
5yzg_L2e-7621783212Cell division cycle 5-like protein
5z56_L2e-7621783212Cell division cycle 5-like protein
5z57_L2e-7621783212Cell division cycle 5-like protein
5z58_L2e-7621783212Cell division cycle 5-like protein
6ff4_L2e-7621783212Cell division cycle 5-like protein
6ff7_L2e-7621783212Cell division cycle 5-like protein
6icz_L2e-7621783212Cell division cycle 5-like protein
6id0_L2e-7621783212Cell division cycle 5-like protein
6id1_L2e-7621783212Cell division cycle 5-like protein
6qdv_O2e-7621783212Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056512.13e-88predicted protein, partial
RefseqXP_015875524.13e-86cell division cycle 5-like protein
RefseqXP_019232628.13e-87PREDICTED: cell division cycle 5-like protein
SwissprotP929489e-85CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A067DSG94e-87A0A067DSG9_CITSI; Uncharacterized protein
STRINGXP_003056512.11e-87(Micromonas pusilla)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.14e-87cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]