PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21983.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 1077aa    MW: 120397 Da    PI: 6.9384
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21983.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.7e-23125226199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae++       +++++ ++l+ +d++++ W++k+iyr++++r++lt+GW+ Fv++++L +gD+v+F +d++s+f  +
  Dca21983.1 125 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfTMQPPS-QELVAKDLHSQAWTFKHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLFIRDEKSQF--L 220
                 99*****************************9555544.59************************************************7766666..9 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  Dca21983.1 221 LGIRRS 226
                 999986 PP
2Auxin_resp123.71.3e-40251333183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras++eFvv+++k++ka++++vs+GmRf+m+fete++  rr++Gt++g+sdldpvrW+nS+Wr+L+
  Dca21983.1 251 AAHAAANNSPFTIFYNPRASPAEFVVPLAKYNKAMYTQVSLGMRFRMMFETEECGVRRYMGTITGISDLDPVRWKNSQWRNLQ 333
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.16E-43114254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41116240IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-20124225No hitNo description
PROSITE profilePS5086312.689125227IPR003340B3 DNA binding domain
PfamPF023624.4E-21125226IPR003340B3 DNA binding domain
SMARTSM010191.6E-23125227IPR003340B3 DNA binding domain
PfamPF065071.3E-35251333IPR010525Auxin response factor
PfamPF023094.0E-89481037IPR033389AUX/IAA domain
PROSITE profilePS5174525.6019501043IPR000270PB1 domain
SuperFamilySSF542771.57E-79651028No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1077 aa     Download sequence    Send to blast
MKAPTNGFMA NSAEEGRVHN SELWHACAGP LVAMPPVGSL VVYFPQGHSE QVAASMQKET  60
DSIPSYPNLP SKLICMLQNV ALHADPETDE VYAQMTLQPV NKYDRDALLA SEMALKQSRQ  120
PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFTMQP PSQELVAKDL HSQAWTFKHI  180
YRGQPKRHLL TTGWSVFVSS KRLFAGDSVL FIRDEKSQFL LGIRRSNRQQ PALASSVISS  240
DSMHIGILAA AAHAAANNSP FTIFYNPRAS PAEFVVPLAK YNKAMYTQVS LGMRFRMMFE  300
TEECGVRRYM GTITGISDLD PVRWKNSQWR NLQVGWDEST TGERPSRVSI WDIEPVVTPF  360
YLCPPPFFRP KFPKQPGLPD DESDIESIFK RGMPWLGDNF GVKDVPNSNF PGLSLVQWMS  420
MQQNNQFSGV QPGLFPSMVS ASALHGDLGV DDPSKLLNFQ SPTLNVPGFQ FNKSSQQNQL  480
GQLHPQQPAN WSQQQQLQQL NSQQQQQQQQ QQQQQHQQQQ QQQQHHQQQQ QQQQQQQQQQ  540
QQQQQHQQLH EQQLQKQQQP PALLKQQMSQ STFVNSGLVS PNQKQNQNQN QNQNQNPNQT  600
VSQNQIPSQN PNQSQSQSQN QNLAQSSIYT QLQQQPVGYS QASLTSIPPD MQFQQQRAPV  660
SQNLSDHQLQ LQLLQKLRHQ SYPQSSHHLL SPVSSQMQPQ VTNQQQHTSQ QNQLLQNRTS  720
SQYQPQQVGV TGMPTSSFMP QQIPTVQQLQ GMQKTAITRS QSVPTDVDIP SCSTSPSANN  780
CQIPPSSFLS RNQQADVRIK NEIPVPKVVE PPRFNGTIGD PLEACSSVTS YGLDARGLQH  840
NLSLPNFGLD SDVQSHPRNS HPLPTAMDGF TPDTLLSRGF DSGKDLHNLI SDYNGGPRDI  900
ETELSAAALS SQTFGVPNMP FKSGCSNDVA MNDPAVLGGG IWPSQTQRMR TYTKVQKRGS  960
VGRSIDVTRY KGYDELRRDL ARMFGIEGML EDPQRTDWKL VYVDLENDIL LVGDDPWDEF  1020
VNCVQSIKIL SSAEVTQMSL DGDLGNTPIP NQASSGTSSG NAWKGHYDDN SAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671835450388Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A182BLZ50.0A0A182BLZ5_BOENI; Auxin response factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19