PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca22042.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 520aa MW: 56821.4 Da PI: 7.2606

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca22042.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.8	5.9e-30	183	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+ +d +++++tYeg+Hnh+ Dca22042.1 183 HDGCQWRKYGQKIAKGNPCPRAYYRCTVSsNCPVRKQVQRCPQDMSILITTYEGNHNHP 241 7************************999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-30	171	243	IPR003657	WRKY domain
PROSITE profile	PS50811	28.231	177	243	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-26	178	243	IPR003657	WRKY domain
SMART	SM00774	1.4E-35	182	242	IPR003657	WRKY domain
Pfam	PF03106	2.9E-26	184	241	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MEEVREENER LKKLLAQIVK EYNSLENQIS SMTRSEASSE TQNSTDNHKL KEGTQERDLI 60 SLSLGSWNNN SEKRREDRET KAQSSINNSD NSSEKRRKVE EGLELGLDCR FEQYTKTTNR 120 EVASESVNNS TTMDDSAIVV KKEEDAIANW PPSRDLKAKE AGNGTEKDEE SLHQPQVKKT 180 RVHDGCQWRK YGQKIAKGNP CPRAYYRCTV SSNCPVRKQV QRCPQDMSIL ITTYEGNHNH 240 PLPLSATAMA SATTAAAAML KTGSLTSHHH QQHNNNHLTT TSSTLPTTSS YGLHASNLIT 300 TFNNNPSMIT AASHNSHPTV TLDLTTANPD YSPFSWPFNS ASSSSSSSRN SSSFLNFSSS 360 PSNNFSSLDF GANNNNHNNN NGNISRANSG FLGNYGTLFP NNSTNINNND ISKSIYQSLN 420 SHHQALNETI AAAATKAIAS NPNFQSVLEA AISSYVGSNN NNNNNNINNV YKNNNNNVNV 480 NNNNNSGASE GGSLALFPAS TSSMKNNSSN ASGDTRDSST

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MEEVREENER LKKLLAQIVK EYNSLENQIS SMTRSEASSE TQNSTDNHKL KEGTQERDLI  60
SLSLGSWNNN SEKRREDRET KAQSSINNSD NSSEKRRKVE EGLELGLDCR FEQYTKTTNR  120
EVASESVNNS TTMDDSAIVV KKEEDAIANW PPSRDLKAKE AGNGTEKDEE SLHQPQVKKT  180
RVHDGCQWRK YGQKIAKGNP CPRAYYRCTV SSNCPVRKQV QRCPQDMSIL ITTYEGNHNH  240
PLPLSATAMA SATTAAAAML KTGSLTSHHH QQHNNNHLTT TSSTLPTTSS YGLHASNLIT  300
TFNNNPSMIT AASHNSHPTV TLDLTTANPD YSPFSWPFNS ASSSSSSSRN SSSFLNFSSS  360
PSNNFSSLDF GANNNNHNNN NGNISRANSG FLGNYGTLFP NNSTNINNND ISKSIYQSLN  420
SHHQALNETI AAAATKAIAS NPNFQSVLEA AISSYVGSNN NNNNNNINNV YKNNNNNVNV  480
NNNNNSGASE GGSLALFPAS TSSMKNNSSN ASGDTRDSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-20	182	243	14	74	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683245.1	1e-123	PREDICTED: probable WRKY transcription factor 72
Refseq	XP_019106079.1	1e-123	PREDICTED: probable WRKY transcription factor 72
TrEMBL	A0A0K9S2W7	1e-100	A0A0K9S2W7_SPIOL; Uncharacterized protein
STRING	XP_010683245.1	1e-123	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	3e-44	WRKY DNA-binding protein 61