PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22243.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 207aa    MW: 23956.1 Da    PI: 9.8626
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22243.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1262.9e-0861155590
        FAR1   5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.......dgkwevtkle..leHnHela 90 
                 e A++ GF ++k+++ ++ +r+ e   + f+Cs++g+++   +  ek +++ ++++++C+ +++  +++          w++ + +    HnH+l+
  Dca22243.1  61 EIAQDNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKGVYDP-EKPKKKPKTQKCDCRFRIRAVQNYhfvhnkqVVLWNIVTSDtfACHNHALT 155
                 568999***99988765549999**************9998887.777777778888888887654443344211133466666556678999996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-561155IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNVPRMDKRP GLCPSYGRTS RLMSLVWTNV QLGGDNVDYN HLFVTEVCFE DRDKAFDWAN  60
EIAQDNGFVL VKANNGSKNR RQPELLASYF RCSRYGRSKG VYDPEKPKKK PKTQKCDCRF  120
RIRAVQNYHF VHNKQVVLWN IVTSDTFACH NHALTKYKDG HRGYAGLDED EKAFVRQEYS  180
NAVLPRDIKT SLHQKSPDKP QPSSKQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112PKKKPKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-