PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22247.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 246aa    MW: 28179.9 Da    PI: 9.2513
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22247.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.91.4e-0767149790
        FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 A+ + F ++k++sk++   g+   +  +C k gk +    +  ++  r+++++++++C  +lk+   ++gk+ v+ +   HnH+l 
  Dca22247.1  67 AHGLCFALVKASSKHR---GNKEYHLIKCDKGGKYTGPFVDpeRVPLRKNTTTKKCQCLFELKIVSGNNGKFAVIPMYGYHNHPLL 149
                 6667788888877776...445688899*****99987666446788999999999999999999999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-567149IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSFTGDGEND YGEDFGSDEV LDDNGFGNDS FLVEELIGDG INYSPHFVNT IYFDTWVKGY  60
NWAKSIAHGL CFALVKASSK HRGNKEYHLI KCDKGGKYTG PFVDPERVPL RKNTTTKKCQ  120
CLFELKIVSG NNGKFAVIPM YGYHNHPLLK NFDGQRQMTS MSDEQKEFVR VNVNAEIRTA  180
NIRRGFQEKY PNQPQPNKRQ FDTVVAKVRL EEMGGRSHFD NMIHLAKKMG TVISTRRMQP  240
MRSYRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-