PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca2228.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 473aa MW: 53765.7 Da PI: 8.4742

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca2228.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	51.7	2.9e-16	87	168	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+ +GF r ++sk + ++ +++ vC+k+g++ + +k ++r+ tr++Ckak+++k +g++++ k+++ H H la Dca2228.1 87 FYRKYATACGFVSRLASSKLK--GPNVSHKHVVCNKQGNTVAKGTK-----QKRQMTRVNCKAKIVLKHIGQGHYQILKFVEGHGHLLA 168 *************998887..7779********9998877.....9999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-13	87	168	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-29	290	384	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
NEKSNVLPAA SNQELNIPDC PPELNEGTIG LDSSMSATIS TSITIGNEDS NVIPAASDQN 60 LRIPDCPPEL KPVVGMRFVT LQHVIHFYRK YATACGFVSR LASSKLKGPN VSHKHVVCNK 120 QGNTVAKGTK QKRQMTRVNC KAKIVLKHIG QGHYQILKFV EGHGHLLATP NTMAHLKQTR 180 ELNLVHKKII LDNSKTNHGP VKSFRMFKEY VRGYNNIGAS LEDFKNFSRD VKKFIKASDA 240 QMLIEMFMHK RGMCKSFYFD FDVDDEGRLS RIFWADPIGI KNYILFGDMV SFDTTFDMNT 300 YKMVFAPFTG VDHHKRCVTF AAGLLSDESA DSFSWLFDCF VKAMGGRFPV CIITDQDLGI 360 KAGVERVFGE KTQHRYCMWH ILKKLPEKVG STICRDTNFL SEISSCVWAE DMEPNEFEDK 420 WCSVVTSNGL TDNEWLKQMY EIRKTWVPAY FRDLFLGGIM RTTSRSESEN NFF

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

NEKSNVLPAA SNQELNIPDC PPELNEGTIG LDSSMSATIS TSITIGNEDS NVIPAASDQN  60
LRIPDCPPEL KPVVGMRFVT LQHVIHFYRK YATACGFVSR LASSKLKGPN VSHKHVVCNK  120
QGNTVAKGTK QKRQMTRVNC KAKIVLKHIG QGHYQILKFV EGHGHLLATP NTMAHLKQTR  180
ELNLVHKKII LDNSKTNHGP VKSFRMFKEY VRGYNNIGAS LEDFKNFSRD VKKFIKASDA  240
QMLIEMFMHK RGMCKSFYFD FDVDDEGRLS RIFWADPIGI KNYILFGDMV SFDTTFDMNT  300
YKMVFAPFTG VDHHKRCVTF AAGLLSDESA DSFSWLFDCF VKAMGGRFPV CIITDQDLGI  360
KAGVERVFGE KTQHRYCMWH ILKKLPEKVG STICRDTNFL SEISSCVWAE DMEPNEFEDK  420
WCSVVTSNGL TDNEWLKQMY EIRKTWVPAY FRDLFLGGIM RTTSRSESEN NFF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761768.1	1e-155	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_021769499.1	1e-152	protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010668319.1	1e-151	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-69	FAR1-related sequence 5