PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca22326.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

YABBY

Protein Properties

Length: 147aa MW: 16394.2 Da PI: 7.6034

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca22326.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	28.2	5.8e-09	1	38	31	69
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslke 69 +++ vtvrCGhC++llsvn +s l+ + +++ ++ Dca22326.1 1 MYNSVTVRCGHCANLLSVNFGPSSPFLPPDFQ-EHTSED 38 6899****************999987776554.444444 PP
2	YABBY	133	3.9e-41	44	121	92	170
YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ts s++++++ ++ pr+pp irPPekrqrvPsayn+fikeeiqrika+nP+ishreafsaaaknWahfP+i fgl Dca22326.1 44 SNTSGGSSSITTELNDPQPRMPP-IRPPEKRQRVPSAYNKFIKEEIQRIKACNPEISHREAFSAAAKNWAHFPHIQFGL 121 34444455677888888999999.9****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.9E-48	1	121	IPR006780	YABBY protein
SuperFamily	SSF47095	7.46E-8	66	115	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.8E-4	69	115	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MYNSVTVRCG HCANLLSVNF GPSSPFLPPD FQEHTSEDNV SLDSNTSGGS SSITTELNDP 60 QPRMPPIRPP EKRQRVPSAY NKFIKEEIQR IKACNPEISH REAFSAAAKN WAHFPHIQFG 120 LNFDAQRQAR VDQTIAGEGS NRSHGLY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685467.1	4e-68	PREDICTED: putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	4e-55	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0K9Q8J8	7e-60	A0A0K9Q8J8_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685466.1	2e-65	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-42	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]