PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22366.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 253aa    MW: 28894 Da    PI: 7.0554
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22366.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.62.6e-10681332690
        FAR1  26 geitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 + +     vC  + k++ e ++  +ek++r+++ +r+gCka++++ ++ +g  +v+k+++ HnHel+
  Dca22366.1  68 EDVQVVVVVCFWKPKKKLEVNDvdAEKQERRKKIHRVGCKARMRLFMM-NGIVCVDKFNEYHNHELV 133
                 4566667788888888888777767888889999*************9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-767133IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAFAVGVGIV DGGLKHLWWF TVVRETGHAE EGGGETTVMV VLVVSKAVSG GGVAVVIVDC  60
RFDDDDEEDV QVVVVVCFWK PKKKLEVNDV DAEKQERRKK IHRVGCKARM RLFMMNGIVC  120
VDKFNEYHNH ELVSVENREF QKLARHLSTY HKELIVSNSR LNIGATKTYR MLKEQVNGYE  180
NIGASLADFK NFHTAVKCFI HERDGQLFVD HFKSMKETRA GFYFDYDIDE DGSLRRAIWA  240
DGYARKNYTV FGD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18199KKKLEVNDVDAEKQERRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021738195.12e-46protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_021773290.12e-45protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_021773603.14e-46protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-14FAR1-related sequence 5