PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22443.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family AP2
Protein Properties Length: 554aa    MW: 61149.9 Da    PI: 10.1484
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22443.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.4e-17134183155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Dca22443.1 134 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 183
                 78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-9134183IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-15134192IPR016177DNA-binding domain
CDDcd000185.86E-23135193No hitNo description
PROSITE profilePS5103217.649135191IPR001471AP2/ERF domain
SMARTSM003807.8E-32135197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-17135191IPR001471AP2/ERF domain
SMARTSM003807.6E-4227276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MMFDLNNSAH NFEKTTTETT IKEDSATNTE LSGTSSSSSV VNADDSPLSS AADPSFVTRQ  60
LFPLTAADNR LAGGGGETSE MEVLRLGTTP NQLSNNNQWL NLGVSGSGSG SVEVGNNKQQ  120
QVRRSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHSA ARAYDRAAIK  180
FRGVDADINF NITDYDDDMK QMKNLSKEEF VQVLRRQSNG FSRGTSRYRG VTLHNKCGQW  240
ESRVGQFLGK TPYDQAAMQR NGTEAVANFD PSTYENPIPL QAHHIGDGHN LDLNLGISIT  300
IDGPKTSNNM GVRESQTHQS PTLLADGKRP MNGASTCYIP GGAHPLYGQP TASHTLYEVM  360
YRTGHLLAIY LVVHILYMDS QRHRDNLVLC GWDCHKVSLQ HMRKRRMTRK PKPFRLLQGC  420
RTGHGTCKTK ATVKVKVKVE AAVQAKSNNR QLQHHQDSRS LPPHRHQRAP RFTITVKEKA  480
NDQKAEAISS AARLSNWAWY MQNQGHGQGQ GQGGGGSSSQ VQQSSTAASS GFPFSTATPS  540
STSTTFHHYG QGRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401406MRKRRM
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744270.11e-121ethylene-responsive transcription factor RAP2-7-like isoform X5
SwissprotQ9SK032e-75RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0K9QBF41e-118A0A0K9QBF4_SPIOL; Uncharacterized protein
STRINGXP_010693088.11e-114(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-70related to AP2.7