PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22515.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 303aa    MW: 34713.9 Da    PI: 7.008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22515.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12123170355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r h ++ErrRR+++ ++f+ L  l+P +     ++++K +iL +A++++k+Lq
  Dca22515.1 123 REHIMAERRRREKLSQRFAALSALIPGL-----TRMDKTSILAEAIKHLKELQ 170
                 5699***********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.91120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10123170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15123181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15124179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-11125174No hitNo description
SMARTSM003532.6E-11126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTLNMNQDNH QRHMSLSSST ESNSNITTKT ATTTTTPKSR PTKKQMRVQN LTSSNFPVIL  60
NFGSTLLPKE NDNNNNHQQI IEDNNEEELP KEDFLYGNYD DVVDEEPPPK RKYNKRTATS  120
STREHIMAER RRREKLSQRF AALSALIPGL TRMDKTSILA EAIKHLKELQ EKIKYFEENT  180
ANRSVKSVML VKKPQHSPPV EDDHASSCDE YIHSTSQRHE QMPDIEAKLS NRNLLIKMTC  240
DKHDTFLSRV LGAVEKHRLT VSTVHASPFG DQTLDVTIIA QMEEFDVRLH DILEDVSSAC  300
RKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERRRRE
2129134RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.13e-40bHLH family protein