PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22615.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 402aa    MW: 43390.8 Da    PI: 5.6419
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22615.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18222276256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++keq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Dca22615.1 222 RKKLRLSKEQSAFLEESFKEHHTLNPKQKQALAKELNLRPRQVEVWFQNRRARTK 276
                 778899***********************************************98 PP
2HD-ZIP_I/II126.89.2e-41222311191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq+++LEesF+e+++L+p++K++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke ++Lr +l
   Dca22615.1 222 RKKLRLSKEQSAFLEESFKEHHTLNPKQKQALAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELHDLR-AL 311
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-19212279IPR009057Homeodomain-like
PROSITE profilePS5007117.216218278IPR001356Homeobox domain
SMARTSM003896.0E-17220282IPR001356Homeobox domain
PfamPF000467.0E-16222276IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-18222276IPR009057Homeodomain-like
CDDcd000862.76E-17222279No hitNo description
PROSITE patternPS000270253276IPR017970Homeobox, conserved site
PfamPF021832.8E-10278312IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.5E-25278321IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MELALSLGNR GVIKSSSGVN FCMGLTPSSS RSTADINLSG DHDHHHHKMM ITNGGGDDDV  60
DGDDDDEIKK MEKIGSSSSC DPTAVISPRQ LDLLPLSPVP RTLTTLPSPP LRFPWLSENL  120
SSEPGSSDGP GQRTMEVDRR QTTMTVVGAT AEDGDAQSSP NSGTSSFMEF SLYTNSNNNC  180
KRSNGNVEGA IVVVGGGGGE QVERGGTTSR GSDDEENGCS TRKKLRLSKE QSAFLEESFK  240
EHHTLNPKQK QALAKELNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR  300
LQKELHDLRA LKTSQPFFMQ LPATTLTMCP SCERVAPTSS SAAAAAHKPV SSSVGPSAAI  360
SSGNDDDDDH DDNGTTLSLG KPSSNNNNSN VPFSSNTPTK TC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226TRKKLRL
2270278RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672636.11e-135PREDICTED: homeobox-leucine zipper protein HOX11
SwissprotP466654e-75HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A0K9QH041e-131A0A0K9QH04_SPIOL; Uncharacterized protein
STRINGXP_010672636.11e-135(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-71homeobox from Arabidopsis thaliana