PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22638.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 296aa    MW: 33454.3 Da    PI: 5.1333
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22638.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.81.5e-0797188490
        FAR1   4 neYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                  +YA + GF+v ++++  + + +   ++r+f  ++e + +  ++      +  ++ + +++ tgCka ++  +e ++ +++++++l+HnH+l 
  Dca22638.1  97 FTYAMKKGFEVFTRSNVINpEYKAAGVSREFGGKNEPRYHMMDRLrlackKGGRKCSDNSNVTGCKAVFEGALE-NDGFQIKSVHLDHNHKLD 188
                 58********999988877544445577777655555554444448888666677799999************9.999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-597189IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSNNGGLFDL NEYFDDDFDG NDAFGEEIEA NEVHNDGRSV ESVQNSIDEV GSTQESPNLV  60
QQAVNVVEAE NVNNDDIVEP KVGMIFPNCE SFAAFIFTYA MKKGFEVFTR SNVINPEYKA  120
AGVSREFGGK NEPRYHMMDR LRLACKKGGR KCSDNSNVTG CKAVFEGALE NDGFQIKSVH  180
LDHNHKLDPA NSRFTISARI ITDYFKKRIL LNDRAGIPIT KNFNAMVLEA GGHENLPFNR  240
RDLRNLLNLE RRLERINGDA AALEEYFVKM KADNPDFFYA IKKDNDGRLH NVLHYP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-08FAR1-related sequence 5