PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22768.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 668aa    MW: 74250.8 Da    PI: 7.4016
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22768.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.81e-11484529145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT.-EEEEEEE-TTSE CS
      SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCd.aevaviifsstgk 45 
                 k+ie k  r+v fskRr+g++KK +EL+ + d  e avi fs  gk
  Dca22768.1 484 KKIEKKESRHVAFSKRRAGLFKKCSELCSMYDgSEFAVIAFSIAGK 529
                 68*************************9887637999999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077273.5E-43283396IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PfamPF077271.3E-9412462IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PROSITE profilePS5006616.638476537IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-14476536IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-16476551IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-8478498IPR002100Transcription factor, MADS-box
PfamPF003192.8E-14485531IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-8498513IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MLLDKRTPYE VLHRKSPLFT HLRVFGCLCY AHNQSHGGDK FASRSRRCVF LGYPNHKKGW  60
KLLDLDNGKM FVSRDVHFYE DIFPFASDLG QSPTSSVPSS LPTDEQLEGV PNSLPPTPAL  120
GLGADVADTP IDAPAPTATG ELAAATELSA IPATDDVADV SATTDGSAAA NDNATAAATL  180
DAPAPAFGRG HRVKLPSTRL RGFVTSTANS PSSPTHSPSP ETSSSGTPYS LANYVTCNSF  240
TPRHRNFLAA VTNGVEPTTF HQALKDDRWC RAMSDEIAAL EKNGTWELTT LPSNKKALGC  300
RWVYKIKYNS DGSVERHKAR LVVFGNRQVE GIDYGETFAP VVKMVTIRTF LAVAAAKNWA  360
LHQMDVHNAF LHCDLHEEVY MKLPPGSVRD TRGKSVVSEN PYTALNRLHV AAGNNDSAIA  420
DFKAYLSRCF HMKDLGVLKY FLGVEVARSV RGIFLSQRKY TEVDDQSKKK KKRTSRGRQK  480
IEIKKIEKKE SRHVAFSKRR AGLFKKCSEL CSMYDGSEFA VIAFSIAGKP FVSGYPSADK  540
VIQRFARDSR DKVGVNWWDD PVDILELDDL ERFKAKLENL MGDVNSRLNE INRLNDAETG  600
DCGQIDDRFC DYNQWLENEA PEICPVVSSG FNRVESFNYL FPDDWMDNEV PEYNLMPLTV  660
YGSCSWLH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415205.11e-130PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X3
RefseqXP_021725291.11e-128uncharacterized protein LOC110692563
TrEMBLA0A2Z6LG301e-136A0A2Z6LG30_TRISU; Uncharacterized protein
STRINGXP_010667912.11e-121(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-16AGAMOUS-like 61