PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca22973.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 651aa    MW: 72767.2 Da    PI: 7.6127
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca22973.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.51.2e-3046130187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+++r++m+  +r+++lk+plWeevs+km+e g++rs+k+Ckek+en+ k++k++k+g+ +++  + +t+++fdqlea
  Dca22973.1  46 RWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKDGRVGKS--DGKTYRFFDQLEA 130
                 8********************************************************************964..5557*******85 PP
2trihelix109.42.3e-34460545187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev aLi++r++m+e++++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Dca22973.1 460 RWPKPEVEALINLRTKMDEKYQENCPKGPLWEEISSSMKQLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 545
                 8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92239103IPR017877Myb-like domain
SMARTSM007170.02143105IPR001005SANT/Myb domain
PfamPF138375.0E-2045130No hitNo description
CDDcd122031.44E-2645110No hitNo description
PROSITE profilePS500907.758453517IPR017877Myb-like domain
SMARTSM007174.2E-4457519IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-4458516IPR009057Homeodomain-like
PfamPF138371.1E-22459546No hitNo description
CDDcd122038.95E-31459524No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MLGDGGSSVP PETDTGVGSS SIMSPDGGGS GGGDFYEGDR STGGNRWPRQ ETLALLKIRS  60
DMDGVFRDSS LKGPLWEEVS RKMAELGYHR SSKKCKEKFE NVYKYHKRTK DGRVGKSDGK  120
TYRFFDQLEA FEQHHSSPSQ LPPLPPTTPR PQPQSSSVHA PVPVTMVFPA GMSSPAGGVT  180
TIPSHPHQQQ QINFTTTSTP ETRRTVSPNY HQQYQQQMEN VSSPSVTHSS SSSTSSDEEV  240
LGRRKRKRKW KDFFGRLMKE VMEKQEVLQA RFLEAVERRE HNRLVREEAW KAQEMGRLNR  300
EHEILVQERS MATAKDAALI DLLKKLSDQH QIPMPFPVHI HPQHELQSQP RNVVPVVTST  360
VVTTVSPLPS PPPPIPKPIS EVVQAPQVTA QFHVQETPVS LPVPVPVPAQ TQAIPQPKPL  420
TQIHPQPVQQ RVMVLANANA DTHHESNNGG ENQQQPSSSR WPKPEVEALI NLRTKMDEKY  480
QENCPKGPLW EEISSSMKQL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF  540
HQLDALYRNK TATTYAAPPL QQAAVKPENL NTMGPIMAQP DQRWRHPHDP HHRVVDAGSG  600
NETDDDEEDD DDDDQGNGYE IVANNGNNSG ICSMSTSTAT AATTTATTTA E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247RRKRKR
2242248RRKRKRK
3243248RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848795.10.0trihelix transcription factor GTL1
SwissprotQ391176e-80TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0K9RCU70.0A0A0K9RCU7_SPIOL; Uncharacterized protein
STRINGXP_009618661.11e-171(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-54Trihelix family protein