PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca22994.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 435aa MW: 47733.1 Da PI: 7.0266

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca22994.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	123	148	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C +C ksF ks++++Hi + H Dca22994.1 123 YICAapHCLKSFLKKSEFESHIHNtH 148 789999****************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00518	0	88	97	IPR017907	Zinc finger, RING-type, conserved site
PROSITE profile	PS50157	9.203	123	149	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	125	148	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MLQIRLNKAS SSEGGTGAKC LPGETVTVAC PDHLVLADLP VAKGLGSATS ASILKIVGRR 60 SRRQLAERVH FCVRCDFPIA VYGRLSPCDH AFCLDCARSD SICYLCDERI QKIQTIKMME 120 GIYICAAPHC LKSFLKKSEF ESHIHNTHAD LLHPNMKNEE MNEPEATSAR QAATGDTTSR 180 GPPRSNYPYN MNPQSNDRDD KGRRPQHQDQ PPLRPLMHPK PPPQWQSNQS EPQPDHWQPN 240 RMQHPNSDSH GGMHSEFGPF SDKQQGNMPD SHREYPPMYP QQPPNFPIHG NGNPMMLGAP 300 PFGFPPFPSD GAPPPFYGGP VPYELGRSDS GPEAGSEQKS VLGFTPGPGG PANFQEGYPH 360 HWNSGPNNSP FEANQGSQGS LRPPQGMAPP PPPPGPPPPH LLQPKNSYFS GDSSNDGKNY 420 GWQSERRDNF GGVQD

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MLQIRLNKAS SSEGGTGAKC LPGETVTVAC PDHLVLADLP VAKGLGSATS ASILKIVGRR  60
SRRQLAERVH FCVRCDFPIA VYGRLSPCDH AFCLDCARSD SICYLCDERI QKIQTIKMME  120
GIYICAAPHC LKSFLKKSEF ESHIHNTHAD LLHPNMKNEE MNEPEATSAR QAATGDTTSR  180
GPPRSNYPYN MNPQSNDRDD KGRRPQHQDQ PPLRPLMHPK PPPQWQSNQS EPQPDHWQPN  240
RMQHPNSDSH GGMHSEFGPF SDKQQGNMPD SHREYPPMYP QQPPNFPIHG NGNPMMLGAP  300
PFGFPPFPSD GAPPPFYGGP VPYELGRSDS GPEAGSEQKS VLGFTPGPGG PANFQEGYPH  360
HWNSGPNNSP FEANQGSQGS LRPPQGMAPP PPPPGPPPPH LLQPKNSYFS GDSSNDGKNY  420
GWQSERRDNF GGVQD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2mq1_A	2e-13	69	148	1	85	E3 ubiquitin-protein ligase Hakai
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679316.1	0.0	PREDICTED: E3 ubiquitin-protein ligase Hakai
Refseq	XP_010679317.1	0.0	PREDICTED: E3 ubiquitin-protein ligase Hakai
TrEMBL	A0A0K9QUV1	1e-164	A0A0K9QUV1_SPIOL; Uncharacterized protein
STRING	XP_010679316.1	0.0	(Beta vulgaris)