PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca23022.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 231aa MW: 25704.5 Da PI: 6.6385

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca23022.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7.1e-40	5	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasn+ kll++lp ++r++a+++l yeA+ar++dP+yG+v++i++lqqq+ +l+a+la+lk Dca23022.1 5 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNIAKLLSQLPVDDRSEAATTLSYEAQARVHDPIYGCVSHIFALQQQVVSLQAQLATLK 103 7***********************89*******************************************************************99 PP DUF260 99 ee 100 ++ Dca23022.1 104 QQ 105 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.64	4	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-38	5	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MSGSPCGACK FLRRKCVRGC VFAPYFCHEQ GATHFAAIHK VFGASNIAKL LSQLPVDDRS 60 EAATTLSYEA QARVHDPIYG CVSHIFALQQ QVVSLQAQLA TLKQQTTNNM INVNYSTLNP 120 NAPSSSNYPQ DVQSWLQSQH PHMVLPPLDP NLDRTSKSSV IYGDHRYNQN NNSTTMMVQN 180 NDQDVSLASF DEGSSSHHSI ASTEFEFKSK WPFDEDSNDL HSMAFGYTQH S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-36	2	99	8	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-36	2	99	8	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010679217.1	1e-105	PREDICTED: LOB domain-containing protein 29
Swissprot	Q9SLB6	5e-63	LBD17_ARATH; LOB domain-containing protein 17
TrEMBL	A0A2R6QSB5	3e-82	A0A2R6QSB5_ACTCH; LOB domain-containing protein
STRING	XP_010679217.1	1e-104	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	5e-52	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]