PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23163.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 390aa    MW: 44989.9 Da    PI: 5.9989
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23163.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35151062102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws+n++sf+vl++ ef++++Lpk+Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +ll++i+
    Dca23163.1  15 FLTKTYEMVDDPTTDSIVSWSSNNRSFIVLNPPEFSRDLLPKFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFQNDDFIRGQPHLLKNIH 102
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Dca23163.1 103 RRKP 106
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-6111104IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.8E-3611104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3812104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3115104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-201538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-205365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-206678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009733Biological Processresponse to auxin
GO:0009958Biological Processpositive gravitropism
GO:0048527Biological Processlateral root development
GO:0048530Biological Processfruit morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMDESQGGSH ALPPFLTKTY EMVDDPTTDS IVSWSSNNRS FIVLNPPEFS RDLLPKFFKH  60
NNFSSFIRQL NTYGFRKVDP EQWEFQNDDF IRGQPHLLKN IHRRKPVHSH SMSSLHGQVS  120
ANPVNDSERQ KYKNDIERLK NEKESLLLEL QRQRKEELGV ESEVQILKER LLHMDQWQSG  180
LVSYLSRILQ KPDLGNIVPQ VENHDRKRRF SRPDQFHDDT TSKDSMGNLL DLDITHLERL  240
EYCLGFWENL VHEIRERFAH TTSPLELAES TTCPDSPAIS YTQLNLDVPH SSSRIDVNSD  300
PPSTAVQRKE HEAGTASAVP QRVNDVFWEQ FLTENPGSAD AQEVQSERKD AGVKEKDSSR  360
LIDQGRYWWN IRNNSNLADN VGQITSAGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-26710412120Heat shock factor protein 1
5d5u_B5e-26810422129Heat shock factor protein 1
5d5v_B5e-26810422129Heat shock factor protein 1
5d5v_D5e-26810422129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750453.10.0heat stress transcription factor A-4c-like
SwissprotQ9FK721e-115HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLA0A0J8B6M90.0A0A0J8B6M9_BETVU; Uncharacterized protein
STRINGXP_010665682.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.11e-104HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]