PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23260.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 309aa    MW: 34091.1 Da    PI: 7.2205
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23260.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.3e-29139196259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+vkg+ +prsYYrC+s+gCpv+k+ver+++    ++ +YegeH+h+
  Dca23260.1 139 SDGYKWRKYGQKMVKGNIHPRSYYRCSSPGCPVRKHVERATDGSLSIVAMYEGEHDHD 196
                 7****************************************666667789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-30123198IPR003657WRKY domain
PROSITE profilePS5081130.366133198IPR003657WRKY domain
SuperFamilySSF1182905.36E-26136198IPR003657WRKY domain
SMARTSM007743.2E-32138197IPR003657WRKY domain
PfamPF031066.1E-24140195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSHQEALGTV IRQPKTQDEA LESSTKQPPI LQSGTKSQNP VTVAQEHMSS PREPNTPKSD  60
TYSWRKHQNE LSTLPREVER GRSGNPNELG LIETMNERDI PIKKRRIKES GKESSQSVYR  120
TFKEPKIVVQ APDGAGINSD GYKWRKYGQK MVKGNIHPRS YYRCSSPGCP VRKHVERATD  180
GSLSIVAMYE GEHDHDKPLL KKQYGSLPTP SVLVNAHTDI PDKSSPVKPE EEKMASPSRA  240
PSPQPTQSST IDCDEPKAVP EAGTQKVLEP TQSSSSDCDE PKAVPEAGTQ NVLDSAQTLL  300
SVNIELESC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-26126198274WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107KKRRIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9RSK34e-56A0A0K9RSK3_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.17e-39WRKY DNA-binding protein 32