PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23366.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HB-other
Protein Properties Length: 311aa    MW: 34411.6 Da    PI: 6.51
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23366.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-072602932154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp+++++++L +++gL+ +q+ +WF N+R +
  Dca23366.1 260 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 293
                 469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-174791IPR005540KNOX1
PfamPF037906.2E-174989IPR005540KNOX1
SMARTSM012562.4E-23104159IPR005541KNOX2
PfamPF037917.8E-18108158IPR005541KNOX2
PROSITE profilePS512139.114214234IPR005539ELK domain
PROSITE profilePS5007111.629234297IPR001356Homeobox domain
SMARTSM003893.1E-11236301IPR001356Homeobox domain
SuperFamilySSF466894.23E-16236301IPR009057Homeodomain-like
CDDcd000868.72E-11237298No hitNo description
Gene3DG3DSA:1.10.10.601.7E-25241299IPR009057Homeodomain-like
PfamPF059201.1E-17254293IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQEQGGLGMM GGGGGGGSGS GGGGGGGMGG LMGGGGGGEG GYCEEYRQLK AEIVTHPLYE  60
QLLGAHVSCL RVATPIDQLS LIDAQLSQAH NLMSSYASQH NNHHSLSLHQ RQDLDNFLAQ  120
YLVVLCSFKE QLQQHVRVHA VEAVMACREI EQNLHDLTGT TLGEGTGATM SDDEDDLQLD  180
YPMDQSGADV NDMMMGFGLP TESERSLMER VRHELKLELK QGFKSKIEDV REEILRKRRA  240
GKLPGDTTSV LKAWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSH  300
TSNSLKSKRK R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290310RKRNWHNNSHTSNSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844481.11e-172homeobox protein knotted-1-like 7
SwissprotQ9FPQ81e-157KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A0K9RVV31e-171A0A0K9RVV3_SPIOL; Uncharacterized protein
STRINGXP_010676578.11e-167(Beta vulgaris)
STRINGcassava4.1_024801m1e-167(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-145KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]