PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23368.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24820.1 Da    PI: 5.0238
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23368.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.1e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien+s rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gklye++s
  Dca23368.1  9 KRIENDSSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPSGKLYEFAS 59
                79***********************************************86 PP
2K-box70.16.9e-2482174799
       K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 ++ +++++ + ++e+  L+k+i++L+ ++R+l+G++Le +s++eLqqLe+qL++sl++iR++Kn l++e i++l + ek l een +L++kle
  Dca23368.1  82 SKMSDEHMMEFKEESLTLEKKIKTLEVSKRKLMGDNLEICSIEELQQLETQLDRSLSSIRARKNALFFERIDKLYEEEKLLLEENARLKEKLE 174
                 448899999*********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.693161IPR002100Transcription factor, MADS-box
CDDcd002656.13E-41370No hitNo description
PRINTSPR004042.0E-30323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-32374IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.2E-2386173IPR002487Transcription factor, K-box
PROSITE profilePS5129713.04889179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVRGKTQMKR IENDSSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP SGKLYEFASS  60
STTKTIERYQ AQMKNLQGGT KSKMSDEHMM EFKEESLTLE KKIKTLEVSK RKLMGDNLEI  120
CSIEELQQLE TQLDRSLSSI RARKNALFFE RIDKLYEEEK LLLEENARLK EKLERPSSLG  180
SSGLDQERDD NEDDDDIPEV ETELFIGPPE SRNNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-20371270Myocyte-specific enhancer factor 2A
3mu6_B3e-20371270Myocyte-specific enhancer factor 2A
3mu6_C3e-20371270Myocyte-specific enhancer factor 2A
3mu6_D3e-20371270Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844484.11e-100agamous-like MADS-box protein AGL19
SwissprotO827436e-74AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A0K9RXL25e-99A0A0K9RXL2_SPIOL; Uncharacterized protein
STRINGXP_010676581.13e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-63AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]