PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca23373.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 489aa MW: 54486.9 Da PI: 6.3838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca23373.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.4	1.7e-10	90	141	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h e+Er+RR+++ s + Lr+llP +K ++ L +Av+YI++L+ Dca23373.1 90 KIVHREVERQRRSEMSSLHASLRSLLPLdY---IRGKRAMSDHLDEAVKYIRDLE 141 678***********************66...9999*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.34E-11	86	144	No hit	No description
SuperFamily	SSF47459	1.7E-12	87	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.198	88	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-11	90	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-7	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF52283	1.29E-10	233	294	No hit	No description
Pfam	PF00389	1.9E-13	233	486	IPR006139	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Gene3D	G3DSA:3.40.50.720	6.0E-17	233	288	IPR016040	NAD(P)-binding domain
CDD	cd12156	2.67E-127	235	478	No hit	No description
SuperFamily	SSF51735	8.06E-49	274	455	IPR016040	NAD(P)-binding domain
Pfam	PF02826	3.2E-47	282	455	IPR006140	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain
Gene3D	G3DSA:3.40.50.720	5.7E-50	289	457	IPR016040	NAD(P)-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046983	Molecular Function	protein dimerization activity
GO:0051287	Molecular Function	NAD binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MDHPFNPTFT PFPPPYENLV TTSPSTFPQF LPHDDVIFPA LVPQQQQQQP QQQQQQQKDV 60 RKKTSSLSSL QPPIDRKTED INQNDSKKKK IVHREVERQR RSEMSSLHAS LRSLLPLDYI 120 RGKRAMSDHL DEAVKYIRDL EQNINALKDQ RDRLKNKVSI DKTPKSKDRE VKVKSSKGGG 180 GLEVNLRTTS NCEEVEENDD NNIKAESYLN DHLNSTFTLL DPITEAGPDP ASDYLDCLPC 240 LECVVGATTG TDHIDLGECR RRGLLVTNIG DAFAVDVADY AVGLLLDVVR NLSSGDRFVR 300 AAFWPEQKGF PLGVSLRGKR VGIVGLGNIG HRIAKRLLPF GCTIGYSSRK VKFEVPFPYY 360 GSVHDLAFNA DILILCCSLT DETRHVVNKD VLNALGKEGI IINVGRGALI NEKELVEFLL 420 EGRIAGAGLD VFEDEPNVPK ELFGLENVVL SAHHAVCTPE SFKAVIDIVL ANLNAFFSNK 480 PLLTPVRFE

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MDHPFNPTFT PFPPPYENLV TTSPSTFPQF LPHDDVIFPA LVPQQQQQQP QQQQQQQKDV  60
RKKTSSLSSL QPPIDRKTED INQNDSKKKK IVHREVERQR RSEMSSLHAS LRSLLPLDYI  120
RGKRAMSDHL DEAVKYIRDL EQNINALKDQ RDRLKNKVSI DKTPKSKDRE VKVKSSKGGG  180
GLEVNLRTTS NCEEVEENDD NNIKAESYLN DHLNSTFTLL DPITEAGPDP ASDYLDCLPC  240
LECVVGATTG TDHIDLGECR RRGLLVTNIG DAFAVDVADY AVGLLLDVVR NLSSGDRFVR  300
AAFWPEQKGF PLGVSLRGKR VGIVGLGNIG HRIAKRLLPF GCTIGYSSRK VKFEVPFPYY  360
GSVHDLAFNA DILILCCSLT DETRHVVNKD VLNALGKEGI IINVGRGALI NEKELVEFLL  420
EGRIAGAGLD VFEDEPNVPK ELFGLENVVL SAHHAVCTPE SFKAVIDIVL ANLNAFFSNK  480
PLLTPVRFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ba1_A	2e-76	224	486	73	332	Hydroxyphenylpyruvate reductase
3baz_A	2e-76	224	486	73	332	Hydroxyphenylpyruvate reductase
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Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate (HP) into glycolate and glycerate. Mostly active in the presence of NADPH and glyoxylate. {ECO:0000269\|PubMed:21205613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010676603.1	1e-129	PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3
Swissprot	Q9LE33	1e-100	HPR3_ARATH; Glyoxylate/hydroxypyruvate reductase HPR3
TrEMBL	V4TPX1	1e-118	V4TPX1_9ROSI; Uncharacterized protein
STRING	XP_010676603.1	1e-129	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62975.1	8e-21	bHLH family protein

Publications ? help Back to Top
Timm S, et al. A cytosolic pathway for the conversion of hydroxypyruvate to glycerate during photorespiration in Arabidopsis. Plant Cell, 2008. 20(10): p. 2848-59 [PMID:18952776] Timm S, et al. The hydroxypyruvate-reducing system in Arabidopsis: multiple enzymes for the same end. Plant Physiol., 2011. 155(2): p. 694-705 [PMID:21205613]