PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23434.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 488aa    MW: 55263 Da    PI: 6.0428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23434.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26e-1376162193
                 EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f  +l++s v+   ++ l  +f++ h  ++   ++ ++le ++g++++vk+     +  + +++GW+eF  a +L egD ++F+l++ ++f+  
  Dca23434.1  76 FRRTLVKSQVSGGFWMGLLPSFCRMHlPSV---DTSIVLEMKNGKQYKVKY--LADR--TAFSGGWREFSLAEKLSEGDELTFQLVNPTKFKVI 162
                 678999******************996433...457***************..4443..459**********************9987777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1870164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-1670162IPR015300DNA-binding pseudobarrel domain
CDDcd100173.59E-1974164No hitNo description
PfamPF023625.1E-1176163IPR003340B3 DNA binding domain
PROSITE profilePS5086310.5676167IPR003340B3 DNA binding domain
SMARTSM010195.8E-1276169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEEIKQNNVK MVAKELPVSS YEVIHLPTTP SNKPPPHLSK GVRDQQQSAK RQKIMPSLTS  60
QTDEFRSIPD AKYPCFRRTL VKSQVSGGFW MGLLPSFCRM HLPSVDTSIV LEMKNGKQYK  120
VKYLADRTAF SGGWREFSLA EKLSEGDELT FQLVNPTKFK VIFNCVLTNK RWFNVDVTGL  180
ELSKETHRDE TVARDEDHGL TIAEIYDEIL QKSDNAKHIT LESNSGDPKL APIPPVFGEY  240
NHMTTSDDLI LEQNKETHRA YSPEAVSQDE DHAAILSKDN ENMQKTEIIQ KITLESDVPD  300
SPVVGDYDGC KTCNDFKIVV EELPTKDYTL PCHIKQSYGQ LCSSQKSVLH ANLLKDVNPI  360
LVAGCIIETV DIANAMMSCE LPTVDSDFAK WDQKLKSLEF LGMNVGFLSA RLHHLQKIAC  420
NSQVVMKRQK CSDLCTEHAI TEKTIKSLQD KLAELRRVSE KQADEIGQLK MEINDQELRF  480
REQVSAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-24B3 family protein