PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23435.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 340aa    MW: 39575.6 Da    PI: 8.8651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23435.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.5e-1015881796
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                ++p +f++++      ++ +tle+e+g+ ++vk+    +  +  +++GW +Fv   +L +gD  vF l++ ++f+ ++++
  Dca23435.1 15 YIPGPFCRRYLP--VIDTVMTLETENGELYKVKY--LPR--AAAFSGGWGRFVVCEKLVQGDLAVFLLVSATRFKRNLMI 88
                79********53..46789***************..555..4669**********************9988888766665 PP
2B340.16.6e-13214297190
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 f+k    + + +++ l++p +f++++  +   ++ +tle+e+g+ +evk+    +  ++++++GW +F+  ++L  gD+ vF+l+++++f
  Dca23435.1 214 FVKYVFAPKAARKSKLSIPPPFCRRYLPV--VDTVMTLETENGELYEVKY--LPR--GTTFSAGWGRFAFCKKLARGDIAVFHLVRSTRF 297
                 677777888889999***********433..4568***************..444..5779**********************9987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.895190IPR003340B3 DNA binding domain
SMARTSM010190.0036985IPR003340B3 DNA binding domain
SuperFamilySSF1019364.19E-121082IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-101383IPR015300DNA-binding pseudobarrel domain
CDDcd100179.82E-101583No hitNo description
PfamPF023621.8E-81588IPR003340B3 DNA binding domain
SuperFamilySSF1019362.09E-15208297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.0E-13209298IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-13212298No hitNo description
PROSITE profilePS5086310.052214305IPR003340B3 DNA binding domain
SMARTSM010195.4E-9214300IPR003340B3 DNA binding domain
PfamPF023621.2E-10214297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQLEILNWFL SKPQYIPGPF CRRYLPVIDT VMTLETENGE LYKVKYLPRA AAFSGGWGRF  60
VVCEKLVQGD LAVFLLVSAT RFKRNLMIMD WKSANADDNQ FIVYKRRHSN DNCRNTEEVV  120
ETNFDNITGF EDSQTVINNL LQHHDLSEVP PHAYYKLFFS QNEFLHRYLL KDLNPNLFVA  180
TKCQFTKDYD TKCEIEISVL ARVWNKSNFQ QPIFVKYVFA PKAARKSKLS IPPPFCRRYL  240
PVVDTVMTLE TENGELYEVK YLPRGTTFSA GWGRFAFCKK LARGDIAVFH LVRSTRFKGW  300
ESRNETLFSY AGLHCKEGLL DCQIAYSSPE IVQESKRMRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-15B3 family protein