PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca23436.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 849aa    MW: 97679.9 Da    PI: 6.6957
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca23436.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.1e-1475165199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 f+k  + sd+++ + l++p +f++++  +  e++ +tle+e+g+ +e k+    +  ++++++GW +F+   +L egD  vF+l+g ++f  +v ++rk
  Dca23436.1  75 FVKYVSASDATRGSKLSIPVPFCRRYLPV--EDTVMTLETENGELYEAKY--LPR--GTTFSGGWGRFAVCEKLVEGDAAVFHLVGATRF--KVYIIRK 165
                 8899999*******************644..6779***************..444..5779************************98888..9999886 PP
2B331.92.3e-104825561799
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++p +f++++  +   ++ +tle+e+g+ +e k+     ++++++++GW +Fv   +L +gD+ vF+l+ +++f  +v ++rk
  Dca23436.1 482 SMPLPFCRRYLPV--VDTLMTLETENGELYEAKY----LPRATTFSGGWGRFVVCENLVQGDVAVFHLVTSTRF--KVYIIRK 556
                 7899******433..4568***************....4555789**********************9976777..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-1970165IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1771165IPR015300DNA-binding pseudobarrel domain
CDDcd100174.14E-1973164No hitNo description
PfamPF023621.3E-1275165IPR003340B3 DNA binding domain
SMARTSM010193.0E-1675166IPR003340B3 DNA binding domain
PROSITE profilePS5086311.70275166IPR003340B3 DNA binding domain
SMARTSM010190.19168253IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-6180240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-7187241IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.74192253IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-14318406IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-12320406IPR015300DNA-binding pseudobarrel domain
CDDcd100174.82E-12321405No hitNo description
SMARTSM010199.5E-11323407IPR003340B3 DNA binding domain
PfamPF023627.2E-8331406IPR003340B3 DNA binding domain
PROSITE profilePS508638.078333407IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-11470556IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-7473557IPR003340B3 DNA binding domain
PfamPF023621.1E-8481556IPR003340B3 DNA binding domain
CDDcd100179.42E-12482555No hitNo description
SuperFamilySSF1019363.73E-14482556IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.924483557IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MEWKFANADD NQFIAYKRRD TNDNCRCADE VVETNFDNIT GLKHHFKEDY DPKSEIEISV  60
LARVWNQKNF EQPIFVKYVS ASDATRGSKL SIPVPFCRRY LPVEDTVMTL ETENGELYEA  120
KYLPRGTTFS GGWGRFAVCE KLVEGDAAVF HLVGATRFKV YIIRKGSLTV ELPTHLLNLY  180
KKASERVLDT LMTLEMENGE LYEAKYLFQG AVFSAGWGRF AVCENLARGD VVVFHLVGAT  240
RVTSLLYSLV YRKTFCLAKA EGIRCEIEGK IKNCAMVGSE IEVSTKCHLG EGFDPKSFVN  300
FSEIEISALP RVWNDMNFEQ PIFVKFLSNP QYIPGPFCRR YLPVIDTVMT LETENGELYE  360
AKYLPRAAAF SGGWGRFAVR EKLVRDDVAV FHLVRATRFK VYIIRKGSST VELPTHLLNL  420
YKKATEHVLD DNQFIAYKRR DTNDNCRCAD EVVETNFDTI TGLKHHFRED YDPERFLSKP  480
QSMPLPFCRR YLPVVDTLMT LETENGELYE AKYLPRATTF SGGWGRFVVC ENLVQGDVAV  540
FHLVTSTRFK VYIIRKGSST VDLPTHLLNL YKKASEHVLG LHYKERLLDR RFVYSSHELV  600
QQSMRICPST EEVVKVSFDN ITWFEHFQTV INNLLQPHDL SEVPLHAYYK ICCSQNSFLH  660
EHLLKDLNPN LFVGAISSII STTVNISTAL RTCTLSTFLD SISDWSKTLD IYNSIGMNVG  720
FLSSRLRDLH NLAVNSEGAD SRRKYIEACR EHPRCECELQ KLKMILDKWR KISVLLTSKV  780
KDLESTVVWE AYMEAYFRLR QAKDEIKEVE VLIGELSKFL EHYDDVIECL KLKADDHEHE  840
FLAKVDAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-21B3 family protein