PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca23485.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 322aa MW: 36533.1 Da PI: 10.7677

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca23485.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	2.9e-31	255	313	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+k Dca23485.1 255 DEFSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCLEDPSMLIVTYEGDHNHSK 313 99*********************9988**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.2E-16	207	251	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.3E-33	241	312	IPR003657	WRKY domain
PROSITE profile	PS50811	29.436	248	314	IPR003657	WRKY domain
SuperFamily	SSF118290	1.02E-26	251	312	IPR003657	WRKY domain
SMART	SM00774	1.3E-37	253	313	IPR003657	WRKY domain
Pfam	PF03106	1.5E-26	255	311	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEIELANKVA VDSGHRVLNI AYQKNDPTRG RHLTAQTNDT VCKFKRVISL LGVNKGFGHA 60 KMRRIKRFPT FTLPLNIFLE TPHSYPKLTV KPVQKFVAEK PSVDISLSVK PPGQNPQFSE 120 QQQQQQKLLL MQRMQMQQQM KYQSEMMNFK MMNFKFDGSI SNGGVTQQTV SSNRSFVSSL 180 SMEGSNRNSF QLIGLPQSSV QNSQHFRRCV VKAENGSVKC GSSAKCHCSK KRKMRVKRSI 240 KVPAISNKVA DIPPDEFSWR KYGQKPIKGS PHPRGYYKCS SIRGCPARKH VERCLEDPSM 300 LIVTYEGDHN HSKFINSHSA QT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	251	312	12	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675100.1	1e-143	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-101	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A0K9R9P0	1e-135	A0A0K9R9P0_SPIOL; Uncharacterized protein
STRING	XP_010675100.1	1e-142	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	4e-89	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]